SMTL ID : 8v1f.1 (1 other biounit)

TMPRSS2 complexed with the noncovalent inhibitor 6-amidino-2-napthol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.68, S.70, Y.81 No protein-ligand interaction detected (PLIP)

3 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)

TAM.2: 6 residues within 4Å: Chain A: N.32, N.34, Y.35, N.73, V.74, K.79 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.34 Hydrogen bonds: A:N.32, A:Y.35, A:N.73, A:K.79 TAM.9: 7 residues within 4Å: Chain B: V.25, H.41, C.42, Q.183, G.184, S.186 Ligands: 7R8.10 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.25 Hydrogen bonds: B:G.184, B:S.186, B:S.186 TAM.11: 5 residues within 4Å: Chain B: G.58, I.59, L.60, R.61, F.64 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.60, B:R.61

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 3 residues within 4Å: Chain A: L.6, Y.45 Chain B: Y.230 No protein-ligand interaction detected (PLIP)

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Chain A: N.47 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.47 EDO.5: 3 residues within 4Å: Chain A: A.38, R.41, D.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.41, A:D.42 EDO.6: 1 residues within 4Å: Chain A: K.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.89 EDO.7: 7 residues within 4Å: Chain A: Y.7, G.8, P.9, I.12, D.58 Chain B: G.115, M.117 No protein-ligand interaction detected (PLIP) EDO.8: 9 residues within 4Å: Chain A: G.44, Y.45, K.46, N.48 Chain B: T.32, P.33, E.34, W.35, M.233 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.44, B:E.34, B:E.34 EDO.12: 3 residues within 4Å: Chain B: G.136, K.137, T.138 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.138, B:T.138, B:T.138, B:Q.183 EDO.13: 7 residues within 4Å: Chain B: H.19, N.22, T.54, F.56, M.65, F.66, Y.67 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.54, B:T.54, B:M.65 EDO.14: 5 residues within 4Å: Chain B: K.85, T.86, K.87, L.164, W.206 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.87, B:K.87 EDO.15: 3 residues within 4Å: Chain A: N.102 Chain B: W.12, W.198 No protein-ligand interaction detected (PLIP) EDO.16: 3 residues within 4Å: Chain B: T.132, K.137, S.139 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.137 Water bridges: B:T.132 EDO.17: 5 residues within 4Å: Chain B: F.174, Q.176, G.177, N.178, V.179 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.177, B:N.178 EDO.18: 5 residues within 4Å: Chain B: N.81, D.83, T.86, N.88, N.89 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.81, B:N.88, B:N.89

1 x 7R8: 6-oxidanylnaphthalene-2-carboximidamide(Non-covalent)

7R8.10: 11 residues within 4Å: Chain B: D.180, S.181, C.182, Q.183, S.186, W.206, G.207, G.209, C.210, G.217 Ligands: TAM.9 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Q.183 Hydrogen bonds: B:D.180, B:S.181, B:G.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fraser, B.J. et al., TMPRSS2 complexed with the noncovalent inhibitor 6-amidino-2-napthol. To Be Published

Release Date

2024-02-07

Peptides

Transmembrane protease serine 2 non-catalytic chain: A
Transmembrane protease serine 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transmembrane protease serine 2 non-catalytic chain

Transmembrane protease serine 2

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