SMTL ID : 7xzn.1 (1 other biounit)

Formate-tetrahydrofolate ligase from Peptostreptococcus anaerobius

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-dimer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: D.34, D.35, E.37, D.47 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.37, A:D.47 EDO.2: 4 residues within 4Å: Chain A: P.163, K.164, I.166, E.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.166, A:E.196 EDO.3: 5 residues within 4Å: Chain A: R.177, R.180, M.536, G.540 Chain B: V.190 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.177, A:R.177, A:R.180, A:R.180, A:G.540 EDO.4: 5 residues within 4Å: Chain A: E.33, D.34, I.36 Chain B: K.41 Ligands: EDO.1 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain B: Y.118, A.416, N.417 No protein-ligand interaction detected (PLIP) EDO.7: 3 residues within 4Å: Chain B: R.241, D.242, N.244 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.244 EDO.8: 5 residues within 4Å: Chain B: R.57, A.58, G.59, K.60, D.298 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.57, B:K.60, B:D.298

2 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)

TAM.5: 4 residues within 4Å: Chain A: Q.15, E.16, A.17, N.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.15 TAM.9: 6 residues within 4Å: Chain B: A.14, Q.15, E.16, A.17, N.18, P.19 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.15, B:N.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, J. et al., Identification of FtfL as a novel target of berberine in intestinal bacteria. Bmc Biol. (2023)

Release Date

2023-06-07

Peptides

Formate--tetrahydrofolate ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Formate--tetrahydrofolate ligase

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