SMTL ID : 7xzo.2 (1 other biounit)

Formate-tetrahydrofolate ligase in complex with ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 6 residues within 4Å: Chain A: E.100, P.101, M.103, I.127, N.128, L.129 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:P.101, A:I.127, A:L.129 K.8: 5 residues within 4Å: Chain B: E.100, P.101, I.127, N.128, L.129 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.100, B:P.101, B:I.127, B:L.129

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 14 residues within 4Å: Chain A: D.10, A.72, G.73, G.75, K.76, T.77, T.78, G.115, G.116, N.385, R.386, F.387, P.388, W.415 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:D.10, A:E.74, A:G.75, A:K.76, A:T.77, A:T.77, A:T.78, A:T.78, A:N.385, A:R.386 Salt bridges: A:K.76, A:K.76 pi-Stacking: A:F.387, A:W.415, A:W.415, A:W.415 ATP.9: 13 residues within 4Å: Chain B: D.10, E.74, G.75, K.76, T.77, T.78, G.115, G.116, G.117, N.385, R.386, F.387, W.415 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:D.10, B:E.74, B:E.74, B:E.74, B:G.75, B:K.76, B:T.77, B:T.77, B:T.78, B:T.78, B:G.115, B:G.117, B:N.385, B:N.385 pi-Stacking: B:W.415, B:W.415, B:W.415

5 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.3: 5 residues within 4Å: Chain A: T.373, K.377, I.378, P.379, E.437 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.379 Hydrogen bonds: A:T.373 BU3.4: 2 residues within 4Å: Chain A: F.440, Y.442 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.442, A:Y.442 BU3.5: 6 residues within 4Å: Chain A: R.165, Y.231, Q.476, E.479, L.480, L.483 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.231, A:Q.476, A:E.479, A:L.483 Hydrogen bonds: A:R.165, A:R.165, A:E.479 BU3.6: 2 residues within 4Å: Chain A: R.321, K.322 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.322 Hydrogen bonds: A:K.322 BU3.7: 7 residues within 4Å: Chain A: N.223, N.226, K.322, L.488, A.523, G.524, G.526 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.488 Hydrogen bonds: A:N.226, A:A.523

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, J. et al., Identification of FtfL as a novel target of berberine in intestinal bacteria. Bmc Biol. (2023)

Release Date

2023-06-07

Peptides

Formate--tetrahydrofolate ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Formate--tetrahydrofolate ligase

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