SMTL ID : 7xzq.1

Crystal structure of TNIK-thiopeptide TP1 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-mer

Ligands

5 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.1: 6 residues within 4Å: Chain A: A.44, M.97, E.98, F.99, C.100, L.152 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:M.97, A:L.152 Hydrogen bonds: A:C.100 BU1.2: 5 residues within 4Å: Chain A: D.227, M.228, H.229, R.232 Chain B: X.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.229 BU1.3: 2 residues within 4Å: Chain A: K.249, W.250 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.250 Hydrogen bonds: A:K.249 BU1.4: 6 residues within 4Å: Chain A: T.27, K.147, Q.149 Chain B: W.2, S.11, G.13 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.147, A:K.147 Hydrophobic interactions: B:W.2 BU1.5: 4 residues within 4Å: Chain B: S.1, W.2, G.3, F.4 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.2 Hydrogen bonds: B:G.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinogradov, A.A. et al., De Novo Discovery of Thiopeptide Pseudo-natural Products Acting as Potent and Selective TNIK Kinase Inhibitors. J.Am.Chem.Soc. (2022)

Release Date

2022-10-26

Peptides

TRAF2 and NCK-interacting protein kinase: A
thiopeptide TP1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TRAF2 and NCK-interacting protein kinase

thiopeptide TP1

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