SMTL ID : 7y0c.1 (1 other biounit)

Crystal structure of BD55-1403 and SARS-CoV-2 Omicron RBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 11 residues within 4Å: Chain A: Y.50, S.54, T.57 Chain B: E.103, L.105, Y.107 Chain C: N.14, A.15, L.42, A.43, L.112 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.105, B:Y.107 Hydrogen bonds: A:T.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, Y. et al., Rational identification of potent and broad sarbecovirus-neutralizing antibody cocktails from SARS convalescents. Cell Rep (2022)

Release Date

2022-09-28

Peptides

BD55-1403 Fab light chain: A
BD55-1403 Fab heavy chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
R

BD55-1403 Fab light chain

BD55-1403 Fab heavy chain

Spike protein S1

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