SMTL ID : 7y0c.2 (1 other biounit)

Crystal structure of BD55-1403 and SARS-CoV-2 Omicron RBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 11 residues within 4Å: Chain A: N.14, A.15, L.42, A.43, P.44, K.111, L.112 Chain B: Y.50, T.57 Chain C: E.103, Y.107 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:Y.107, A:L.42, B:T.57 Hydrophobic interactions: C:Y.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, Y. et al., Rational identification of potent and broad sarbecovirus-neutralizing antibody cocktails from SARS convalescents. Cell Rep (2022)

Release Date

2022-09-28

Peptides

Spike protein S1: A
BD55-1403 Fab light chain: B
BD55-1403 Fab heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
N

C
M

Spike protein S1

BD55-1403 Fab light chain

BD55-1403 Fab heavy chain

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