SMTL ID : 7y4u.1

Crystal structure of cMET kinase domain bound by compound 9Y

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x I94: ~{N}-methyl-4-[1-[2-[3-(1-methylpyrazol-4-yl)quinolin-6-yl]ethyl]-6-oxidanylidene-pyridazin-3-yl]-2-(trifluoromethyl)benzamide(Non-covalent)

I94.1: 18 residues within 4Å: Chain A: I.47, G.48, A.71, L.120, P.121, Y.122, M.123, K.124, G.126, D.127, N.130, R.171, M.174, A.184, D.185, A.189, Y.193, D.194 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.47, A:I.47, A:I.47, A:A.71, A:D.127, A:A.184, A:Y.193, A:Y.193 Hydrogen bonds: A:M.123, A:D.127, A:N.130, A:D.185 Water bridges: A:D.127 pi-Stacking: A:Y.193 Halogen bonds: A:R.171, A:Y.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Discovery of D6808, a Highly Selective and Potent Macrocyclic c-Met Inhibitor for Gastric Cancer Harboring MET Gene Alteration Treatment. J.Med.Chem. (2022)

Release Date

2022-11-23

Peptides

Hepatocyte growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hepatocyte growth factor receptor

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