SMTL ID : 8gvj.1

Crystal structure of cMET kinase domain bound by D6808

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

monomer

Ligands

1 x KGL: (1^4Z,5^2E)-6^3-(trifluoromethyl)-5^1,5^6-dihydro-1^1H-8-aza-2(3,6)-quinolina-5(1,3)-pyridazina-1(4,1)-pyrazola-6(1,4)-benzenacyclododecaphane-5^6,7-dione(Non-covalent)

KGL.1: 15 residues within 4Å: Chain A: I.47, A.71, L.120, P.121, Y.122, M.123, G.126, D.127, N.130, R.171, M.174, A.184, D.185, A.189, Y.193 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.47, A:I.47, A:A.71, A:L.120, A:A.184, A:D.185, A:Y.193, A:Y.193 Hydrogen bonds: A:M.123, A:D.127, A:D.185 pi-Stacking: A:Y.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Discovery of D6808, a Highly Selective and Potent Macrocyclic c-Met Inhibitor for Gastric Cancer Harboring MET Gene Alteration Treatment. J.Med.Chem. (2022)

Release Date

2022-11-23

Peptides

Hepatocyte growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hepatocyte growth factor receptor

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