SMTL ID : 7yb3.1

SufS with D-cysteine for 1 min

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: H.56, E.255, K.268, W.272 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.255, A:K.268 Water bridges: A:E.255, A:E.255, A:K.268 PEG.2: 5 residues within 4Å: Chain A: T.7, R.10, T.387, E.389, E.390 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.387, A:T.387, A:E.389 PEG.4: 4 residues within 4Å: Chain A: K.46, Q.50, Y.51, R.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.46 PEG.6: 5 residues within 4Å: Chain A: D.68, E.71, G.72, E.75, M.86 No protein-ligand interaction detected (PLIP) PEG.7: 4 residues within 4Å: Chain B: H.56, E.255, K.268, W.272 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.268 Water bridges: B:H.56, B:E.255, B:E.255, B:K.268 PEG.8: 5 residues within 4Å: Chain B: T.7, R.10, T.387, E.389, E.390 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.7, B:T.387 PEG.10: 4 residues within 4Å: Chain B: K.46, Q.50, Y.51, R.65 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.46 PEG.12: 5 residues within 4Å: Chain B: D.68, E.71, G.72, E.75, M.86 No protein-ligand interaction detected (PLIP)

4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 5 residues within 4Å: Chain A: D.8, Q.12, A.39, F.293, E.296 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.8, A:Q.12 Water bridges: A:Q.12 PGE.5: 5 residues within 4Å: Chain A: V.181, M.209, S.303, H.307, R.331 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.303 Water bridges: A:V.181, A:V.181, A:K.210 PGE.9: 5 residues within 4Å: Chain B: D.8, Q.12, A.39, F.293, E.296 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.8, B:Q.12 Water bridges: B:Q.12 PGE.11: 5 residues within 4Å: Chain B: V.181, M.209, S.303, H.307, R.331 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.303 Water bridges: B:V.181, B:V.181, B:K.210, B:D.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, R. et al., Snapshots of thiazolidine fomration of PLP-dependent enzyme SufS. to be published

Release Date

2023-07-05

Peptides

Cysteine desulfurase SufS: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cysteine desulfurase SufS

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