SMTL ID : 7ybu.1

Human propionyl-coenzyme A carboxylase

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

6 x BTI: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL(Covalent)

BTI.1: 11 residues within 4Å: Chain A: M.693, K.694 Chain K: T.226, V.230, S.233, V.234 Chain L: C.365, P.395, G.396, F.397, P.399 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain K Hydrogen bonds: L:F.397 Hydrophobic interactions: K:V.234 BTI.2: 11 residues within 4Å: Chain B: M.693, K.694 Chain G: C.365, P.395, G.396, F.397, P.399 Chain I: T.226, V.230, S.233, V.234 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain I Hydrogen bonds: G:F.397 Hydrophobic interactions: I:V.234 BTI.3: 11 residues within 4Å: Chain C: C.365, P.395, G.396, F.397, P.399 Chain D: M.693, K.694 Chain E: T.226, V.230, S.233, V.234 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:F.397 Hydrophobic interactions: E:V.234 BTI.4: 11 residues within 4Å: Chain F: M.693, K.694 Chain K: C.365, P.395, G.396, F.397, P.399 Chain L: T.226, V.230, S.233, V.234 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain L Hydrogen bonds: K:F.397 Hydrophobic interactions: L:V.234 BTI.5: 11 residues within 4Å: Chain C: T.226, V.230, S.233, V.234 Chain E: C.365, P.395, G.396, F.397, P.399 Chain H: M.693, K.694 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:F.397 Hydrophobic interactions: C:V.234 BTI.6: 11 residues within 4Å: Chain G: T.226, V.230, S.233, V.234 Chain I: C.365, P.395, G.396, F.397, P.399 Chain J: M.693, K.694 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain G Hydrogen bonds: I:F.397 Hydrophobic interactions: G:V.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, J. et al., Structural insight into synergistic activation of human 3-methylcrotonyl-CoA carboxylase. Nat.Struct.Mol.Biol. (2024)

Release Date

2023-07-05

Peptides

Propionyl-CoA carboxylase alpha chain, mitochondrial: ABDFHJ
Propionyl-CoA carboxylase beta chain, mitochondrial: CEGIKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

F
F

H
H

J
J

C
C

E
E

G
G

I
I

K
K

L
P

Propionyl-CoA carboxylase alpha chain, mitochondrial

Propionyl-CoA carboxylase beta chain, mitochondrial

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