SMTL ID : 7yck.2 (1 other biounit)

Crystal structure of SARS-CoV-2 Spike RBD in complex with FP-12A Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 3 residues within 4Å: Chain A: G.7, E.8, N.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.7, A:S.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, K.A. et al., Structural basis for a conserved neutralization epitope on the receptor-binding domain of SARS-CoV-2. Nat Commun (2023)

Release Date

2023-02-01

Peptides

Spike protein S1: A
FP-12A Fab heavy chain: B
FP-12A Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

C
F

Spike protein S1

FP-12A Fab heavy chain

FP-12A Fab light chain

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