SMTL ID : 7yhd.1

Crystal structure of VIM-2 MBL in complex with 3-(4-(4-(2-aminoethoxy)phenyl)-1H-1,2,3-triazol-1-yl)phthalic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.87, R.88, C.167, H.209 Ligands: ZN.2, IU7.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.87, A:C.167, A:H.209 ZN.2: 6 residues within 4Å: Chain A: H.83, H.85, D.87, H.148 Ligands: ZN.1, IU7.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.83, A:H.85, A:H.148

1 x IU7: 3-[4-[4-(2-azanylethoxy)phenyl]-1,2,3-triazol-1-yl]phthalic acid(Non-covalent)

IU7.3: 14 residues within 4Å: Chain A: F.31, W.56, H.83, H.85, D.86, D.87, E.115, H.148, C.167, R.174, N.179, H.209 Ligands: ZN.1, ZN.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.31, A:W.56 Hydrogen bonds: A:D.86, A:D.87, A:E.115, A:N.179 Water bridges: A:R.174 Salt bridges: A:H.83, A:H.85, A:H.148, A:H.148, A:R.174, A:H.209 pi-Stacking: A:Y.36, A:H.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, Y.H. et al., Metal binding pharmacophore click-derived discovery of new broad-spectrum metallo-beta-lactamase inhibitors. Eur.J.Med.Chem. (2023)

Release Date

2023-06-07

Peptides

Beta-lactamase class B VIM-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase class B VIM-2

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