SMTL ID : 7yj0.1 (1 other biounit)

Structural basis of oxepinone formation by a flavin-monooxygenase VibO

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 25 residues within 4Å: Chain A: I.63, G.64, G.66, P.67, V.68, D.87, R.88, S.89, R.97, A.98, Q.160, C.182, T.183, A.184, S.224, D.225, G.226, R.287, Y.289, G.355, D.356, A.363, A.366, G.368, M.369 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:R.97 Hydrogen bonds: A:G.64, A:V.68, A:R.88, A:R.88, A:S.89, A:S.89, A:Q.160, A:Q.160, A:A.184, A:A.184, A:R.287, A:Y.289, A:D.356, A:A.363, A:G.368 Water bridges: A:G.66, A:G.226, A:S.357 pi-Cation interactions: A:R.88 FAD.2: 27 residues within 4Å: Chain B: I.63, G.64, G.66, P.67, V.68, D.87, R.88, S.89, R.97, A.98, Q.160, C.182, T.183, A.184, S.224, D.225, G.226, R.287, Y.289, L.335, G.355, D.356, A.363, A.366, F.367, G.368, M.369 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:R.97, B:L.335, B:L.335 Hydrogen bonds: B:V.68, B:R.88, B:S.89, B:Q.160, B:Q.160, B:A.184, B:A.184, B:R.287, B:D.356, B:D.356, B:G.368, B:M.369 Water bridges: B:D.99, B:G.226, B:S.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, K.N. et al., A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone. Nat Commun (2023)

Release Date

2023-05-10

Peptides

VibO: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VibO

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