SMTL ID : 7yj0.2 (1 other biounit)

Structural basis of oxepinone formation by a flavin-monooxygenase VibO

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 26 residues within 4Å: Chain A: I.63, G.64, G.66, P.67, V.68, D.87, R.88, S.89, R.97, A.98, Q.160, C.182, T.183, A.184, S.224, D.225, G.226, R.287, Y.289, L.335, G.355, D.356, A.363, A.366, G.368, M.369 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:R.97, A:L.335 Hydrogen bonds: A:G.66, A:V.68, A:R.88, A:R.88, A:S.89, A:Q.160, A:Q.160, A:A.184, A:A.184, A:R.287, A:Y.289, A:D.356, A:D.356 Water bridges: A:G.226, A:A.227, A:S.357 FAD.3: 29 residues within 4Å: Chain B: I.63, G.64, A.65, G.66, P.67, V.68, D.87, R.88, S.89, R.97, A.98, Q.160, C.182, T.183, A.184, S.224, D.225, G.226, M.230, R.287, Y.289, L.335, A.354, G.355, D.356, A.363, A.366, G.368, M.369 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:R.97 Hydrogen bonds: B:G.66, B:V.68, B:R.88, B:Q.160, B:Q.160, B:A.184, B:A.184, B:R.287, B:D.356, B:A.363 Water bridges: B:G.69, B:G.69, B:R.97, B:R.97, B:G.226, B:D.356, B:D.356 pi-Cation interactions: B:R.88

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: R.262, W.263, P.280, R.281, M.285 Chain B: H.127, E.141 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.262, A:W.263, A:R.281, A:R.281, B:H.127, B:E.141 Water bridges: A:R.262, A:N.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, K.N. et al., A flavin-monooxygenase catalyzing oxepinone formation and the complete biosynthesis of vibralactone. Nat Commun (2023)

Release Date

2023-05-10

Peptides

VibO: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

VibO

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