- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-10-10-1-mer
- Ligands
- 25 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.2: 31 residues within 4Å:- Chain A: T.39, F.42, A.43, G.46, I.50, C.93, A.94, A.97, F.98, W.101, E.105, I.118, A.121, F.122, M.124, A.125, Y.149, G.150, I.151, H.154, A.238, V.242
- Chain B: Y.209, A.212, L.213, A.216, M.217, W.251, M.255
- Ligands: BCL.1, BCL.10
16 PLIP interactions:13 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:A.43, A:I.50, A:A.94, A:A.97, A:A.121, A:F.122, A:F.122, A:F.122, A:A.125, A:Y.149, A:Y.149, A:V.242, A:V.242, B:Y.209, B:A.212, B:A.216
BPH.16: 25 residues within 4Å:- Chain A: F.182, A.185, W.186, A.189, M.190, L.220, M.221
- Chain B: S.59, G.63, A.64, F.67, F.68, S.124, V.125, W.128, V.132, M.145, A.148, F.149, A.152, A.272, V.273, T.276
- Ligands: BCL.14, BCL.15
11 PLIP interactions:7 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:A.64, B:F.67, B:F.68, B:A.148, B:F.149, B:F.149, B:T.276, A:F.182, A:A.185, A:A.189
- pi-Stacking: A:W.186
- 4 x U10: UBIQUINONE-10(Non-covalent)
U10.3: 24 residues within 4Å:- Chain A: P.172, M.175, S.179, L.180, T.183, W.186, M.190, H.191, L.194, E.213, D.214, F.217, Y.223, S.224, V.225, G.226, T.227, I.230, L.233, W.264
- Chain B: F.90, I.178
- Ligands: BCL.14, LMT.22
18 PLIP interactions:17 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.180, A:T.183, A:W.186, A:M.190, A:L.194, A:F.217, A:F.217, A:Y.223, A:V.225, A:V.225, A:I.230, A:I.230, A:L.233, A:L.233, A:W.264, B:I.178
- Hydrogen bonds: A:V.225, A:G.226
U10.4: 33 residues within 4Å:- Chain A: L.22, V.37, F.41, F.42, V.78, Q.88, T.91, V.92, C.93, T.95, G.96, V.134, W.143
- Chain D: V.16, A.19, Q.20, F.23, L.26, L.30, L.33, I.34
- Chain F: V.18, G.21, V.22, F.25
- Chain X: P.36, F.39, G.40, L.43, V.44
- Ligands: PEE.6, LMT.37, BCL.40
25 PLIP interactions:6 interactions with chain D, 3 interactions with chain X, 13 interactions with chain A, 3 interactions with chain F- Hydrophobic interactions: D:F.23, D:L.26, D:L.30, D:L.30, D:L.33, D:I.34, X:F.39, X:L.43, X:V.44, A:V.37, A:F.41, A:F.41, A:F.41, A:F.42, A:F.42, A:V.78, A:Q.88, A:T.91, A:T.95, A:V.134, A:W.143, A:W.143, F:V.22, F:F.25, F:F.25
U10.12: 8 residues within 4Å:- Chain A: W.264, W.266, W.267
- Chain B: M.86, L.89, F.90, F.91
- Ligands: LMT.8
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:W.267, A:W.267, B:L.89, B:F.90
- Hydrogen bonds: B:F.90
U10.18: 25 residues within 4Å:- Chain A: F.30, V.32, G.36, I.40, W.101, R.104
- Chain B: L.213, M.217, H.218, T.221, I.222, A.247, A.248, W.251, M.255, F.257, N.258, A.259, T.260, M.261, I.264, W.267
- Ligands: BCL.10, LMT.11, PGV.34
16 PLIP interactions:10 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:L.213, B:M.217, B:W.251, B:F.257, B:A.259, B:I.264, B:I.264, B:W.267, B:W.267, A:F.30, A:F.30, A:F.30, A:V.32, A:I.40, A:W.101
- Hydrogen bonds: B:A.259
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
PGV.5: 9 residues within 4Å:- Chain A: W.60, N.61, P.62, Q.63
- Chain J: L.33, S.37
- Ligands: PGV.13, BCL.46, LMT.52
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.62, A:P.62
- Hydrogen bonds: A:Q.63
PGV.13: 13 residues within 4Å:- Chain A: Q.63, W.152
- Chain B: P.199, L.203, A.206, H.300, Y.302
- Chain C: I.17, W.18, W.21
- Ligands: PGV.5, BCL.10, PGV.34
8 PLIP interactions:1 interactions with chain A, 4 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: A:W.152, B:L.203, B:A.206, C:W.18, C:W.21, C:W.21
- Hydrogen bonds: B:H.300
- Salt bridges: B:H.300
PGV.24: 15 residues within 4Å:- Chain A: N.200, P.201
- Chain B: G.142, K.143, H.144, W.147, W.154, R.266, I.269, W.270, I.281
- Chain C: F.23, Y.26, Y.30
- Ligands: PGV.25
12 PLIP interactions:2 interactions with chain C, 9 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: C:F.23, C:Y.26, B:W.147, B:W.154, B:W.154, B:W.154, B:I.269, B:I.281
- Hydrogen bonds: B:K.143, A:N.200
- Salt bridges: B:H.144, B:R.266
PGV.25: 10 residues within 4Å:- Chain B: W.147, W.270, L.277, I.281
- Chain C: A.16, S.19, F.20, F.23
- Chain N: R.15
- Ligands: PGV.24
9 PLIP interactions:4 interactions with chain C, 1 interactions with chain N, 4 interactions with chain B- Hydrophobic interactions: C:A.16, C:F.23, C:F.23, C:F.23, B:W.147, B:W.270, B:L.277, B:I.281
- Hydrogen bonds: N:R.15
PGV.26: 16 residues within 4Å:- Chain B: Y.51, G.53, I.54, A.55, V.58, I.123, I.126, T.134, R.135, Q.138
- Chain R: R.15, A.19, V.22
- Chain T: R.14, R.15
- Ligands: LDA.31
12 PLIP interactions:9 interactions with chain B, 1 interactions with chain T, 2 interactions with chain R- Hydrophobic interactions: B:V.58, B:I.123, B:I.126, B:I.126, R:R.15
- Hydrogen bonds: B:I.54, B:A.55, B:T.134, B:Q.138
- Salt bridges: B:R.135, T:R.15, R:R.15
PGV.34: 20 residues within 4Å:- Chain B: R.252, G.256, F.257, W.267, W.270, M.271
- Chain C: L.24, I.28, L.31, Q.32, Y.40, L.42, N.52, G.54, P.55, F.56
- Ligands: LMT.11, PGV.13, U10.18, BCL.46
12 PLIP interactions:7 interactions with chain C, 5 interactions with chain B- Hydrophobic interactions: C:L.24, C:I.28, C:I.28, C:I.28, C:L.31, C:F.56, B:F.257, B:F.257, B:W.267
- Hydrogen bonds: C:N.52, B:R.252
- Salt bridges: B:R.252
PGV.35: 12 residues within 4Å:- Chain C: A.22, Y.26, Y.29, P.55, P.57
- Chain J: F.11, D.12, R.15
- Chain L: R.14, R.15, V.18
- Ligands: BCL.46
6 PLIP interactions:2 interactions with chain C, 3 interactions with chain L, 1 interactions with chain J- Hydrophobic interactions: C:Y.26, C:Y.29, L:V.18
- Salt bridges: L:R.14, L:R.15
- Hydrogen bonds: J:D.12
PGV.69: 12 residues within 4Å:- Chain B: Y.133, W.162
- Chain P: F.11, R.15, A.19, F.23
- Chain R: V.18, V.22, F.25
- Ligands: LDA.31, LDA.70, BCL.76
8 PLIP interactions:2 interactions with chain B, 4 interactions with chain P, 2 interactions with chain R- Hydrophobic interactions: B:W.162, P:F.23, R:V.22, R:F.25
- Hydrogen bonds: B:Y.133, P:R.15, P:R.15
- Salt bridges: P:R.15
- 1 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
PEE.6: 18 residues within 4Å:- Chain A: L.17, F.42, G.96, C.99, S.100, A.102, L.103, V.106, R.110, P.119, V.120, S.123, I.126, F.127
- Chain X: P.36
- Ligands: U10.4, LDA.7, LMT.88
11 PLIP interactions:10 interactions with chain A, 1 interactions with chain X- Hydrophobic interactions: A:F.42, A:A.102, A:L.103, A:L.103, A:P.119, A:V.120, A:I.126, A:F.127, A:F.127, X:P.36
- Salt bridges: A:R.110
- 11 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.7: 7 residues within 4Å:- Chain A: F.116, V.120
- Chain B: E.3, Q.5, R.227
- Chain C: Y.243
- Ligands: PEE.6
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:E.3, A:F.116, A:V.120, A:V.120
- Hydrogen bonds: B:E.3
LDA.27: 4 residues within 4Å:- Chain B: F.67, F.85
- Ligands: BCL.14, SPO.19
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:F.67
LDA.29: 12 residues within 4Å:- Chain A: M.221, G.222
- Chain B: T.31, P.32, A.33, G.34, I.47, G.48, I.50
- Ligands: BCL.14, LMT.28, LDA.30
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:I.47, B:I.50
LDA.30: 10 residues within 4Å:- Chain B: T.31, I.50, L.52, G.56, T.57, L.60
- Ligands: BCL.14, LMT.28, LDA.29, LMT.86
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:T.31, B:I.50, B:L.52, B:L.60
LDA.31: 6 residues within 4Å:- Chain B: W.129, Y.133, W.147, L.150
- Ligands: PGV.26, PGV.69
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.129, B:W.147, B:L.150
LDA.32: 9 residues within 4Å:- Chain B: L.166, M.167, L.285, G.287, T.288
- Chain C: M.1, L.12
- Ligands: LMT.20, LDA.33
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:L.166, B:L.285, C:L.12
LDA.33: 5 residues within 4Å:- Chain C: M.1
- Ligands: LDA.32, LDA.61, LMT.67, LDA.68
No protein-ligand interaction detected (PLIP)LDA.42: 10 residues within 4Å:- Chain A: V.27, V.32, I.40
- Chain F: F.11, D.12, R.15, A.19
- Chain H: R.14, V.18
- Ligands: LMT.11
6 PLIP interactions:4 interactions with chain F, 2 interactions with chain A- Hydrophobic interactions: F:R.15, F:A.19, A:V.32, A:I.40
- Hydrogen bonds: F:D.12
- Salt bridges: F:D.12
LDA.61: 11 residues within 4Å:- Chain C: M.1, V.4, F.6, L.15
- Chain N: L.30, L.33, I.34, S.37, P.39
- Ligands: LDA.33, LDA.68
6 PLIP interactions:3 interactions with chain N, 3 interactions with chain C- Hydrophobic interactions: N:L.30, N:L.33, N:I.34, C:F.6, C:F.6, C:L.15
LDA.68: 5 residues within 4Å:- Chain P: L.36, N.42, T.45
- Ligands: LDA.33, LDA.61
1 PLIP interactions:1 interactions with chain P- Hydrophobic interactions: P:L.36
LDA.70: 6 residues within 4Å:- Chain P: R.15, V.18, A.19, V.22, F.23
- Ligands: PGV.69
2 PLIP interactions:2 interactions with chain P- Hydrophobic interactions: P:V.22, P:F.23
- 18 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.8: 4 residues within 4Å:- Chain A: W.263, W.266
- Ligands: LMT.9, U10.12
Ligand excluded by PLIPLMT.9: 8 residues within 4Å:- Chain A: P.172, F.173, I.255, Y.256, F.257, W.260, W.263
- Ligands: LMT.8
Ligand excluded by PLIPLMT.11: 15 residues within 4Å:- Chain A: A.2, V.27, G.28, P.29, F.30
- Chain B: M.255, G.256, F.257
- Chain H: R.14, R.15, V.18
- Ligands: U10.18, PGV.34, LDA.42, BCL.46
Ligand excluded by PLIPLMT.20: 8 residues within 4Å:- Chain B: L.103, I.165, L.166, M.167, G.168
- Ligands: LDA.32, LMT.67, LMT.74
Ligand excluded by PLIPLMT.21: 14 residues within 4Å:- Chain B: L.103, A.104, L.105, F.161
- Chain R: I.34, T.38, P.39
- Chain T: L.33, L.36, S.37, N.42, T.45
- Ligands: SPO.19, LMT.75
Ligand excluded by PLIPLMT.22: 11 residues within 4Å:- Chain A: V.225, L.233
- Chain B: F.8, N.9, Q.10, I.38, W.41, M.42
- Chain C: G.147, R.148
- Ligands: U10.3
Ligand excluded by PLIPLMT.23: 17 residues within 4Å:- Chain B: A.65, F.68, T.69, V.72, W.73, Y.76, L.108, K.109, V.113, I.116, F.120
- Chain V: L.26, V.29, L.30, L.33, I.34, S.37
Ligand excluded by PLIPLMT.28: 6 residues within 4Å:- Chain B: G.34, M.35, L.36, I.47
- Ligands: LDA.29, LDA.30
Ligand excluded by PLIPLMT.37: 11 residues within 4Å:- Chain A: L.76, N.77, V.78
- Chain D: L.33, L.36, N.42, L.44
- Chain X: F.37, L.41
- Ligands: U10.4, LMT.89
Ligand excluded by PLIPLMT.52: 12 residues within 4Å:- Chain A: W.60
- Chain H: L.30, I.34, T.38
- Chain J: V.29, L.33, L.36, N.42, L.44, T.45
- Ligands: PGV.5, MYR.47
Ligand excluded by PLIPLMT.57: 12 residues within 4Å:- Chain C: G.8, D.9
- Chain J: L.30, I.34, S.37, T.38
- Chain L: V.29, L.33, L.36, S.37, N.42
- Ligands: BCL.46
Ligand excluded by PLIPLMT.67: 12 residues within 4Å:- Chain B: W.154, W.162, L.166, L.284
- Chain P: S.37, T.38, P.39
- Chain R: N.42, T.45
- Ligands: LMT.20, LDA.33, LMT.74
Ligand excluded by PLIPLMT.74: 11 residues within 4Å:- Chain B: L.103, I.165, G.168
- Chain R: L.33, L.36, S.37, P.39, N.42
- Ligands: LMT.20, LMT.67, LMT.75
Ligand excluded by PLIPLMT.75: 9 residues within 4Å:- Chain B: E.100, Y.101, G.102, L.103, A.104
- Chain R: L.33, S.37
- Ligands: LMT.21, LMT.74
Ligand excluded by PLIPLMT.84: 11 residues within 4Å:- Chain B: L.105, A.106, P.107, L.108, I.116
- Chain T: I.34, S.37
- Chain V: L.36, S.37, N.42, T.45
Ligand excluded by PLIPLMT.86: 10 residues within 4Å:- Chain B: Y.28, R.30, T.31, P.32, L.52, L.60
- Chain V: D.12, R.14, R.15
- Ligands: LDA.30
Ligand excluded by PLIPLMT.88: 14 residues within 4Å:- Chain A: T.16, L.17, I.18, F.34, F.35, L.103
- Chain C: G.248
- Chain D: R.15, V.22
- Chain X: S.2, Y.28, L.32, P.36
- Ligands: PEE.6
Ligand excluded by PLIPLMT.89: 12 residues within 4Å:- Chain A: L.76
- Chain D: H.32, L.33, W.43, L.44
- Chain X: F.37, L.41, L.45, Y.48, L.52
- Ligands: BCL.36, LMT.37
Ligand excluded by PLIP- 1 x FE: FE (III) ION(Non-covalent)
- 18 x SPO: SPHEROIDENE(Non-covalent)
SPO.19: 27 residues within 4Å:- Chain B: W.66, F.67, F.68, I.70, G.71, Y.74, W.75, F.85, L.89, Q.115, S.118, M.121, A.122, W.156, S.157, G.160, F.161, W.170, V.174, Y.176, G.177, I.178, H.181
- Chain T: L.33
- Ligands: BCL.14, LMT.21, LDA.27
18 PLIP interactions:17 interactions with chain B, 1 interactions with chain T- Hydrophobic interactions: B:W.66, B:F.67, B:F.67, B:F.67, B:F.68, B:I.70, B:I.70, B:Y.74, B:L.89, B:Q.115, B:A.122, B:W.156, B:W.170, B:V.174, B:V.174, B:Y.176, B:I.178, T:L.33
SPO.39: 25 residues within 4Å:- Chain D: Q.20, F.23, L.24, L.27, L.30, I.34
- Chain E: V.23, Y.24, S.26, G.27, L.28, F.31
- Chain F: F.25, A.28, H.32, L.33
- Chain X: K.15, G.19, I.20, I.22, M.26
- Ligands: BCL.36, BCL.38, BCL.40, SPO.44
15 PLIP interactions:6 interactions with chain D, 2 interactions with chain X, 2 interactions with chain F, 5 interactions with chain E- Hydrophobic interactions: D:F.23, D:F.23, D:L.24, D:L.27, D:L.30, D:I.34, X:I.20, X:I.22, F:F.25, F:A.28, E:V.23, E:V.23, E:L.28, E:L.28, E:F.31
SPO.41: 26 residues within 4Å:- Chain D: F.4, K.6, I.7, V.10
- Chain E: L.7
- Chain F: F.17, Q.20, F.23, L.24, L.27, I.31, I.34
- Chain G: L.20, V.23, Y.24, G.27, L.28, F.31
- Chain H: F.25, A.28, V.29, H.32, L.33
- Ligands: SPO.44, BCL.45, BCL.48
24 PLIP interactions:4 interactions with chain H, 4 interactions with chain D, 9 interactions with chain G, 6 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: H:F.25, H:A.28, H:V.29, H:H.32, D:F.4, D:K.6, D:K.6, D:I.7, G:L.20, G:L.20, G:L.20, G:V.23, G:V.23, G:Y.24, G:L.28, G:L.28, G:F.31, F:F.23, F:F.23, F:L.24, F:L.27, F:L.27, F:I.31, E:L.7
SPO.43: 28 residues within 4Å:- Chain F: F.4, K.6, I.7, V.10, F.11
- Chain G: L.7
- Chain H: F.17, Q.20, F.23, L.24, L.27, I.34
- Chain I: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain J: F.25, A.28, H.32, L.33, L.36
- Ligands: BCL.48, SPO.49, BCL.50, BCL.53
20 PLIP interactions:6 interactions with chain H, 5 interactions with chain F, 5 interactions with chain I, 1 interactions with chain G, 3 interactions with chain J- Hydrophobic interactions: H:F.17, H:F.23, H:F.23, H:L.24, H:L.27, H:I.34, F:F.4, F:K.6, F:I.7, F:I.7, F:F.11, I:L.20, I:L.20, I:V.23, I:Y.24, I:F.31, G:L.7, J:A.28, J:H.32, J:L.36
SPO.44: 11 residues within 4Å:- Chain E: M.43, F.49
- Chain F: Q.20
- Chain G: V.34, A.38, A.41, W.45
- Ligands: BCL.38, SPO.39, BCL.40, SPO.41
5 PLIP interactions:3 interactions with chain G, 2 interactions with chain E- Hydrophobic interactions: G:V.34, G:A.41, G:W.45, E:F.49, E:F.49
SPO.49: 13 residues within 4Å:- Chain G: M.43, F.49
- Chain H: F.17, Q.20, G.21
- Chain I: F.31, V.34, A.38, A.41, W.45
- Ligands: SPO.43, BCL.45, BCL.48
7 PLIP interactions:1 interactions with chain H, 3 interactions with chain I, 3 interactions with chain G- Hydrophobic interactions: H:F.17, I:F.31, I:V.34, I:A.41, G:F.49, G:F.49, G:F.49
SPO.51: 12 residues within 4Å:- Chain I: F.49
- Chain J: F.17, Q.20
- Chain K: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: BCL.50, BCL.53, SPO.54
7 PLIP interactions:2 interactions with chain I, 4 interactions with chain K, 1 interactions with chain J- Hydrophobic interactions: I:F.49, I:F.49, K:F.31, K:V.34, K:V.42, K:W.45, J:F.17
SPO.54: 25 residues within 4Å:- Chain H: F.4, K.6, I.7, V.10
- Chain J: F.17, Q.20, F.23, L.24, L.27, L.30, I.34
- Chain K: L.20, V.23, Y.24, G.27, L.28, F.31
- Chain L: F.25, A.28, V.29, H.32, L.33
- Ligands: SPO.51, BCL.56, BCL.58
22 PLIP interactions:3 interactions with chain L, 6 interactions with chain K, 9 interactions with chain J, 4 interactions with chain H- Hydrophobic interactions: L:F.25, L:A.28, L:H.32, K:L.20, K:L.20, K:V.23, K:V.23, K:Y.24, K:F.31, J:F.17, J:F.17, J:F.23, J:F.23, J:L.24, J:L.24, J:L.27, J:L.30, J:I.34, H:F.4, H:K.6, H:K.6, H:I.7
SPO.55: 25 residues within 4Å:- Chain J: F.4, K.6, I.7, V.10
- Chain K: L.7
- Chain L: F.17, Q.20, F.23, L.24, L.27, I.34
- Chain M: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain N: F.25, A.28, H.32, L.33
- Ligands: SPO.59, BCL.60, BCL.62
22 PLIP interactions:8 interactions with chain L, 3 interactions with chain N, 5 interactions with chain M, 6 interactions with chain J- Hydrophobic interactions: L:F.17, L:F.17, L:F.23, L:F.23, L:L.24, L:L.24, L:L.27, L:I.34, N:F.25, N:A.28, N:H.32, M:E.19, M:V.23, M:L.28, M:L.28, M:F.31, J:F.4, J:K.6, J:K.6, J:I.7, J:I.7, J:V.10
SPO.59: 12 residues within 4Å:- Chain K: F.49
- Chain L: F.17, Q.20
- Chain M: F.31, V.34, A.38, A.41, V.42, W.45
- Ligands: SPO.55, BCL.56, BCL.58
8 PLIP interactions:3 interactions with chain M, 4 interactions with chain K, 1 interactions with chain L- Hydrophobic interactions: M:F.31, M:V.34, M:V.42, K:F.49, K:F.49, K:F.49, K:F.49, L:F.17
SPO.63: 24 residues within 4Å:- Chain L: F.4, K.6, I.7, V.10
- Chain M: L.7
- Chain N: F.17, Q.20, F.23, L.24, L.27, L.30
- Chain O: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain P: F.25, H.32, L.33
- Ligands: SPO.65, BCL.66, BCL.71
22 PLIP interactions:8 interactions with chain O, 5 interactions with chain L, 2 interactions with chain P, 6 interactions with chain N, 1 interactions with chain M- Hydrophobic interactions: O:E.19, O:L.20, O:V.23, O:V.23, O:V.23, O:L.28, O:L.28, O:F.31, L:F.4, L:K.6, L:K.6, L:I.7, L:V.10, P:F.25, P:H.32, N:F.17, N:F.23, N:F.23, N:L.24, N:L.27, N:L.30, M:L.7
SPO.64: 26 residues within 4Å:- Chain N: F.4, K.6, I.7, V.10
- Chain O: L.7
- Chain P: F.17, Q.20, F.23, L.24, L.27, L.30, I.31
- Chain Q: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain R: F.25, V.29, H.32, L.33
- Ligands: SPO.72, BCL.73, BCL.76
20 PLIP interactions:3 interactions with chain N, 6 interactions with chain Q, 7 interactions with chain P, 3 interactions with chain R, 1 interactions with chain O- Hydrophobic interactions: N:F.4, N:K.6, N:I.7, Q:L.20, Q:V.23, Q:V.23, Q:V.23, Q:L.28, Q:F.31, P:F.17, P:F.23, P:F.23, P:L.24, P:L.27, P:L.30, P:I.31, R:F.25, R:V.29, R:H.32, O:L.7
SPO.65: 12 residues within 4Å:- Chain M: F.49
- Chain N: F.17, G.21, K.50
- Chain O: F.31, V.34, A.38, A.41, W.45
- Ligands: BCL.60, BCL.62, SPO.63
11 PLIP interactions:5 interactions with chain O, 2 interactions with chain N, 4 interactions with chain M- Hydrophobic interactions: O:F.31, O:F.31, O:V.34, O:A.41, O:W.45, N:F.17, M:F.49, M:F.49, M:F.49, M:F.49
- Hydrogen bonds: N:K.50
SPO.72: 13 residues within 4Å:- Chain O: F.49
- Chain P: F.17, Q.20, G.21, K.50
- Chain Q: V.34, A.38, A.41, V.42, W.45
- Ligands: SPO.64, BCL.66, BCL.71
5 PLIP interactions:3 interactions with chain Q, 2 interactions with chain O- Hydrophobic interactions: Q:V.34, Q:A.41, Q:V.42, O:F.49, O:F.49
SPO.77: 28 residues within 4Å:- Chain P: F.4, K.6, I.7, V.10
- Chain Q: L.7
- Chain R: F.17, Q.20, F.23, L.24, L.27, L.30, I.31
- Chain S: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain T: F.25, A.28, V.29, H.32, L.33
- Ligands: BCL.76, SPO.79, BCL.80, BCL.81
25 PLIP interactions:6 interactions with chain R, 4 interactions with chain T, 8 interactions with chain S, 2 interactions with chain Q, 5 interactions with chain P- Hydrophobic interactions: R:F.17, R:F.23, R:F.23, R:L.24, R:L.27, R:I.31, T:F.25, T:A.28, T:V.29, T:H.32, S:L.20, S:L.20, S:V.23, S:V.23, S:Y.24, S:L.28, S:L.28, S:F.31, Q:L.7, Q:L.7, P:F.4, P:K.6, P:I.7, P:I.7, P:V.10
SPO.78: 24 residues within 4Å:- Chain R: F.4, K.6, I.7, V.10
- Chain T: Q.20, F.23, L.24, L.27, L.30, I.31
- Chain U: E.19, L.20, V.23, Y.24, G.27, L.28, F.31
- Chain V: F.25, V.29, H.32, L.33
- Ligands: SPO.82, BCL.83, BCL.85
18 PLIP interactions:7 interactions with chain T, 5 interactions with chain R, 5 interactions with chain U, 1 interactions with chain V- Hydrophobic interactions: T:F.23, T:F.23, T:L.24, T:L.27, T:L.27, T:L.30, T:I.31, R:F.4, R:F.4, R:K.6, R:I.7, R:I.7, U:E.19, U:L.20, U:V.23, U:Y.24, U:F.31, V:F.25
SPO.79: 12 residues within 4Å:- Chain Q: F.49
- Chain R: F.17, Q.20, K.50
- Chain S: F.31, V.34, A.38, A.41, W.45
- Ligands: BCL.73, BCL.76, SPO.77
8 PLIP interactions:4 interactions with chain S, 2 interactions with chain R, 2 interactions with chain Q- Hydrophobic interactions: S:F.31, S:V.34, S:A.41, S:W.45, R:F.17, Q:F.49, Q:F.49
- Hydrogen bonds: R:K.50
SPO.82: 10 residues within 4Å:- Chain S: F.49
- Chain T: F.17, K.50
- Chain U: V.34, A.38, A.41, W.45
- Ligands: SPO.78, BCL.80, BCL.81
7 PLIP interactions:2 interactions with chain T, 2 interactions with chain S, 3 interactions with chain U- Hydrophobic interactions: T:F.17, S:F.49, S:F.49, U:V.34, U:A.41, U:W.45
- Hydrogen bonds: T:K.50
- 1 x MYR: MYRISTIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tani, K. et al., Rhodobacter capsulatus forms a compact crescent-shaped LH1-RC photocomplex. Nat Commun (2023)
- Release Date
- 2023-02-22
- Peptides
- Reaction center protein L chain: A
Reaction center protein M chain: B
Photosynthetic reaction center H subunit: C
Light-harvesting protein B-870 alpha chain: DFHJLNPRTV
Light-harvesting protein B-870 beta chain: EGIKMOQSUW
Photosynthetic reaction center PufX protein: X - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
HD
AF
DH
FJ
IL
KN
OP
QR
ST
VV
YE
BG
EI
GK
JM
NO
PQ
RS
TU
WW
ZX
X - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-10-10-1-mer
- Ligands
- 25 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
- 4 x U10: UBIQUINONE-10(Non-covalent)
- 8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
- 1 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 11 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- 18 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 1 x FE: FE (III) ION(Non-covalent)
- 18 x SPO: SPHEROIDENE(Non-covalent)
- 1 x MYR: MYRISTIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tani, K. et al., Rhodobacter capsulatus forms a compact crescent-shaped LH1-RC photocomplex. Nat Commun (2023)
- Release Date
- 2023-02-22
- Peptides
- Reaction center protein L chain: A
Reaction center protein M chain: B
Photosynthetic reaction center H subunit: C
Light-harvesting protein B-870 alpha chain: DFHJLNPRTV
Light-harvesting protein B-870 beta chain: EGIKMOQSUW
Photosynthetic reaction center PufX protein: X - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
HD
AF
DH
FJ
IL
KN
OP
QR
ST
VV
YE
BG
EI
GK
JM
NO
PQ
RS
TU
WW
ZX
X - Membrane
-
We predict this structure to be a membrane protein.