SMTL ID : 7yv4.1

Crystal structure of human UCHL3 in complex with Farrerol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x JXY: (2~{S})-2-(4-hydroxyphenyl)-6,8-dimethyl-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one(Non-covalent)

JXY.1: 16 residues within 4Å: Chain A: L.54, F.56, K.61, Y.62, F.65, R.66, E.182, D.184, K.187, F.212, M.213, R.215, D.216, L.220, R.221, F.222 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.54, A:F.56, A:F.56, A:Y.62, A:F.65, A:F.212, A:F.212 Hydrogen bonds: A:K.187, A:R.215 Water bridges: A:E.182, A:D.184 pi-Cation interactions: A:R.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, W. et al., Farrerol directly activates the deubiqutinase UCHL3 to promote DNA repair and reprogramming when mediated by somatic cell nuclear transfer. Nat Commun (2023)

Release Date

2023-04-19

Peptides

Ubiquitin carboxyl-terminal hydrolase isozyme L3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin carboxyl-terminal hydrolase isozyme L3

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