SMTL ID : 1xd3.2 (1 other biounit)

Crystal structure of UCHL3-UbVME complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

hetero-oligomer

Ligands

7 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: D.163 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.163, H2O.121, H2O.185, H2O.358 MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain A: H.179 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.179, H2O.177, H2O.183 MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain A: Q.78, D.79 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain A: V.146, E.149 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.149, H2O.61, H2O.425 MG.7: 5 residues within 4Å: Chain A: D.79, V.80, T.81, Y.181, N.192 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.79, A:Y.181

1 x GVE: METHYL 4-AMINOBUTANOATE(Covalent)

GVE.8: 9 residues within 4Å: Chain A: I.58, Q.89, N.93, C.95, V.166, L.168, H.169, R.186 Chain B: G.75 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.169 Hydrogen bonds: A:L.168 Water bridges: A:N.93, A:N.93 Salt bridges: A:H.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Misaghi, S. et al., Structure of the Ubiquitin Hydrolase UCH-L3 Complexed with a Suicide Substrate. J.Biol.Chem. (2005)

Release Date

2004-11-23

Peptides

Ubiquitin Carboxyl-terminal esterase L3: A
UBC protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Ubiquitin Carboxyl-terminal esterase L3

UBC protein

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