SMTL ID : 7z1q.1

X-ray crystal structure of SLPYL1-E151D mutant with NIO molecules

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

homo-dimer

Ligands

4 x NIO: NICOTINIC ACID(Non-covalent)

NIO.1: 10 residues within 4Å: Chain A: K.95, F.144, R.152, L.153, Y.156, F.195, A.196, V.199, V.200 Ligands: NIO.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.156, A:V.199, A:V.199, A:V.200 Water bridges: A:K.95, A:R.152, A:Y.156, A:Y.156, A:N.203 Salt bridges: A:K.95 NIO.2: 10 residues within 4Å: Chain A: F.97, V.119, S.121, R.152, F.195, V.199 Chain B: F.97, S.121 Ligands: NIO.1, NIO.7 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.195, A:F.195 Hydrogen bonds: A:S.121, A:S.121 Salt bridges: A:R.152 NIO.6: 10 residues within 4Å: Chain B: K.95, F.144, R.152, L.153, Y.156, F.195, A.196, V.199, V.200 Ligands: NIO.7 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.156, B:V.199, B:V.199, B:V.200 Water bridges: B:K.95, B:R.152, B:Y.156, B:E.177, B:N.203 Salt bridges: B:K.95 NIO.7: 10 residues within 4Å: Chain A: F.97, S.121 Chain B: F.97, V.119, S.121, R.152, F.195, V.199 Ligands: NIO.2, NIO.6 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.195, B:F.195 Hydrogen bonds: B:S.121, B:S.121 Salt bridges: B:R.152

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: K.95, H.96, F.97, K.206 Chain B: T.198, K.201 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:F.97 Water bridges: A:K.206, A:K.206, A:K.206, B:T.198, B:T.198, B:K.201 Salt bridges: A:H.96, A:K.206, B:K.201 SO4.8: 6 residues within 4Å: Chain A: T.198, K.201 Chain B: K.95, H.96, F.97, K.206 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain B Water bridges: A:T.198, A:K.201, B:K.206, B:K.206, B:K.206 Salt bridges: A:K.201, B:H.96, B:K.206 Hydrogen bonds: B:F.97

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: K.99, S.100, T.118 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.99, A:S.100, A:S.100, A:T.118, A:T.118 GOL.5: 4 residues within 4Å: Chain A: E.48, G.164, F.165, E.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.166, A:E.166 GOL.9: 3 residues within 4Å: Chain B: K.99, S.100, T.118 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.99, B:S.100, B:S.100, B:T.118 GOL.10: 4 residues within 4Å: Chain B: E.48, G.164, F.165, E.166 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.166, B:E.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Infantes, L. et al., Structure-Based Modulation of the Ligand Sensitivity of a Tomato Dimeric Abscisic Acid Receptor Through a Glu to Asp Mutation in the Latch Loop. Front Plant Sci (2022)

Release Date

2022-07-13

Peptides

SlPYL1-E151D: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SlPYL1-E151D

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