SMTL ID : 7z1r.1

X-ray crystal structure of SLPYL1-E151D mutant ABA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x A8S: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid(Non-covalent)

A8S.1: 17 residues within 4Å: Chain A: K.95, V.119, S.121, A.126, S.128, E.130, F.144, I.146, H.151, L.153, Y.156, E.177, F.195, A.196, V.199, V.200 Chain B: S.121 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.119, A:V.119, A:I.146, A:Y.156, A:F.195, A:V.199 Hydrogen bonds: A:E.177 Water bridges: A:K.95, A:S.121, A:Y.156, A:N.203 Salt bridges: A:K.95 A8S.4: 17 residues within 4Å: Chain A: S.121 Chain B: K.95, V.119, S.121, A.126, S.128, E.130, F.144, I.146, H.151, L.153, Y.156, E.177, F.195, A.196, V.199, V.200 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.119, B:V.119, B:I.146, B:Y.156, B:F.195, B:V.199 Hydrogen bonds: B:E.177 Water bridges: B:K.95, B:S.121, B:N.203 Salt bridges: B:K.95

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: T.198, K.201, L.202 Chain B: K.95, H.96, F.97, I.98, K.206 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.96, B:F.97, B:I.98, A:K.201 Water bridges: B:Q.92, B:I.98 GOL.3: 4 residues within 4Å: Chain A: E.48, G.164, F.165, E.166 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.164, A:E.166, A:E.166 GOL.5: 8 residues within 4Å: Chain A: K.95, H.96, F.97, I.98, K.206 Chain B: T.198, K.201, L.202 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:F.97, A:I.98, B:K.201 Water bridges: A:Q.92, A:I.98 GOL.6: 4 residues within 4Å: Chain B: E.48, G.164, F.165, E.166 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.164, B:E.166, B:E.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Infantes, L. et al., Structure-Based Modulation of the Ligand Sensitivity of a Tomato Dimeric Abscisic Acid Receptor Through a Glu to Asp Mutation in the Latch Loop. Front Plant Sci (2022)

Release Date

2022-07-13

Peptides

SlPYL1-E151D ABA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D000

B
D000

SlPYL1-E151D ABA

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