SMTL ID : 7z6h.1

Structure of DNA-bound human RAD17-RFC clamp loader and 9-1-1 checkpoint clamp

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-1-1-1-1-1-mer

Ligands

5 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Covalent)

AGS.1: 19 residues within 4Å: Chain D: V.41, Y.44, R.45, P.46, E.51, V.52, A.53, P.80, G.81, T.82, G.83, K.84, T.85, S.86, L.238, R.239, I.242 Chain E: E.153, R.178 18 PLIP interactions: 16 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:Y.44, D:R.45, D:A.53, D:G.81, D:T.82, D:G.83, D:K.84, D:T.85, D:T.85, D:T.85, D:S.86, D:R.239, E:E.153, E:R.178 Salt bridges: D:R.45, D:K.84, D:R.239, D:R.239 AGS.2: 15 residues within 4Å: Chain E: W.4, Y.8, R.9, P.10, L.16, D.17, Y.18, S.44, A.46, G.47, K.48, K.49, T.50, R.51, L.227 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:D.17, E:G.47, E:K.48, E:K.49, E:T.50, E:T.50, E:R.51 AGS.3: 18 residues within 4Å: Chain F: V.39, Y.42, R.43, I.50, V.51, G.52, P.78, G.79, T.80, G.81, K.82, T.83, T.84, E.142, N.172, R.201, R.230, L.233 13 PLIP interactions: 1 interactions with chain G, 12 interactions with chain F Hydrogen bonds: G:R.188, F:Y.42, F:R.43, F:V.51, F:G.79, F:T.80, F:K.82, F:T.83, F:T.83, F:E.142, F:R.230 Salt bridges: F:R.43, F:R.230 AGS.4: 17 residues within 4Å: Chain D: R.164, E.168, P.189 Chain G: V.43, R.47, P.48, L.54, G.83, T.84, G.85, K.86, T.87, S.88, N.176, L.197, M.233, R.234 11 PLIP interactions: 11 interactions with chain G Hydrogen bonds: G:G.83, G:T.84, G:T.84, G:G.85, G:K.86, G:T.87, G:S.88, G:R.234 Salt bridges: G:K.86, G:R.234, G:R.234 AGS.5: 18 residues within 4Å: Chain F: R.184 Chain H: V.419, D.420, Y.422, K.423, P.424, E.429, L.430, A.431, P.466, G.467, C.468, G.469, K.470, T.471, T.472, S.586, R.661 16 PLIP interactions: 15 interactions with chain H, 1 interactions with chain F Hydrogen bonds: H:D.420, H:A.431, H:G.467, H:G.469, H:K.470, H:K.470, H:T.471, H:T.471, H:T.472, H:T.472, H:S.586, H:R.661, F:R.184 Salt bridges: H:K.470, H:R.661, H:R.661

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Day, M. et al., Structure of the human RAD17-RFC clamp loader and 9-1-1 checkpoint clamp bound to a dsDNA-ssDNA junction. Nucleic Acids Res. (2022)

Release Date

2022-05-04

Peptides

Cell cycle checkpoint control protein RAD9A: A
Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17: BH
Checkpoint protein HUS1: C
Replication factor C subunit 4: D
Replication factor C subunit 3: E
Replication factor C subunit 2: F
Replication factor C subunit 5: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H
K

C
C

D
D

E
E

F
F

G
G

Cell cycle checkpoint control protein RAD9A

Cell cycle checkpoint protein RAD1,Cell cycle checkpoint protein RAD17

Checkpoint protein HUS1

Replication factor C subunit 4

Replication factor C subunit 3

Replication factor C subunit 2

Replication factor C subunit 5

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