- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-3-mer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
AGS.2: 23 residues within 4Å:- Chain A: V.34, Y.37, K.38, P.39, T.44, I.45, I.46, G.47, P.100, G.101, V.102, G.103, K.104, T.105, T.106, N.200, I.258, R.259, L.262
- Chain B: R.155, E.159, R.184
- Ligands: MG.1
16 PLIP interactions:14 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:V.34, A:I.46, A:G.47, A:G.101, A:V.102, A:V.102, A:G.103, A:K.104, A:T.105, A:T.106, A:R.259, B:R.155, B:R.184
- Salt bridges: A:K.104, A:R.259, A:R.259
AGS.4: 23 residues within 4Å:- Chain B: V.39, Y.42, R.43, P.44, E.49, I.50, V.51, G.52, P.78, G.79, T.80, G.81, K.82, T.83, T.84, N.172, R.201, M.229, R.230, L.233
- Chain C: R.139, A.164
- Ligands: MG.3
19 PLIP interactions:18 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:Y.42, B:R.43, B:R.43, B:V.51, B:G.79, B:T.80, B:T.80, B:G.81, B:K.82, B:T.83, B:T.84, B:T.84, B:R.230, B:R.230, C:R.139
- Salt bridges: B:R.43, B:K.82, B:R.230, B:R.230
AGS.6: 20 residues within 4Å:- Chain C: V.23, Y.26, R.27, P.28, D.33, L.34, I.35, P.62, G.63, T.64, G.65, K.66, T.67, S.68, N.156, R.185, M.213, R.214
- Chain D: R.165
- Ligands: MG.5
17 PLIP interactions:16 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:Y.26, C:I.35, C:G.63, C:T.64, C:T.64, C:G.65, C:K.66, C:T.67, C:T.67, C:S.68, C:R.185, C:R.214, C:R.214, D:R.165
- Salt bridges: C:K.66, C:R.214, C:R.214
AGS.8: 20 residues within 4Å:- Chain D: V.41, Y.44, R.45, P.46, V.52, A.53, F.54, Q.55, P.80, G.81, T.82, G.83, K.84, T.85, S.86, L.202, R.210, L.238, R.239
- Ligands: MG.7
16 PLIP interactions:16 interactions with chain D- Hydrogen bonds: D:V.41, D:F.54, D:Q.55, D:Q.55, D:G.81, D:T.82, D:G.83, D:K.84, D:T.85, D:S.86, D:D.150, D:R.210
- Salt bridges: D:R.45, D:K.84, D:R.239, D:R.239
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.9: 19 residues within 4Å:- Chain E: V.5, R.9, P.10, L.16, D.17, Y.18, P.43, S.44, G.45, A.46, G.47, K.48, K.49, T.50, R.51, V.195, L.223, R.224, L.227
17 PLIP interactions:17 interactions with chain E- Hydrogen bonds: E:V.5, E:R.9, E:R.9, E:D.17, E:Y.18, E:G.45, E:A.46, E:G.47, E:G.47, E:K.48, E:K.49, E:T.50, E:T.50, E:R.51
- Salt bridges: E:K.48, E:R.224, E:R.224
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Gaubitz, C. et al., Structure of the human clamp loader bound to the sliding clamp: a further twist on AAA+ mechanism. Biorxiv (2020)
- Release Date
- 2020-02-26
- Peptides
- Replication factor C subunit 1: A
Replication factor C subunit 2: B
Replication factor C subunit 5: C
Replication factor C subunit 4: D
Replication factor C subunit 3: E
Proliferating cell nuclear antigen: FGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-3-mer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Gaubitz, C. et al., Structure of the human clamp loader bound to the sliding clamp: a further twist on AAA+ mechanism. Biorxiv (2020)
- Release Date
- 2020-02-26
- Peptides
- Replication factor C subunit 1: A
Replication factor C subunit 2: B
Replication factor C subunit 5: C
Replication factor C subunit 4: D
Replication factor C subunit 3: E
Proliferating cell nuclear antigen: FGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H