SMTL ID : 7z6q.1

Cryo-EM structure of the whole photosynthetic complex from the green sulfur bacteria

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-2-1-6-mer

Ligands

2 x GS0: Bacteriochlorophyll A isomer(Non-covalent)

GS0.1: 23 residues within 4Å: Chain A: I.443, V.488, G.492, I.552, K.553, G.554, S.556, W.560, I.567, I.596, F.600, L.617, H.621, W.624, Y.681, T.685, L.688, V.689, F.692 Chain K: F.600 Ligands: CLA.2, GS0.72, CLA.73 20 PLIP interactions: 17 interactions with chain A, 3 interactions with chain K, Hydrophobic interactions: A:I.443, A:W.560, A:W.560, A:W.560, A:I.567, A:I.596, A:I.596, A:L.617, A:W.624, A:T.685, A:L.688, A:F.692, K:F.600, K:F.600, K:F.600 Hydrogen bonds: A:Y.681 pi-Stacking: A:F.600, A:W.624, A:W.624 Metal complexes: A:H.621 GS0.72: 23 residues within 4Å: Chain A: F.597, F.600 Chain K: M.436, V.488, K.553, S.556, W.560, M.570, I.596, F.600, T.604, I.607, L.617, H.621, W.624, Y.681, T.685, L.688, V.689, F.692 Ligands: GS0.1, CLA.2, CLA.73 22 PLIP interactions: 19 interactions with chain K, 3 interactions with chain A, Hydrophobic interactions: K:V.488, K:W.560, K:W.560, K:W.560, K:I.596, K:I.596, K:T.604, K:I.607, K:L.617, K:W.624, K:T.685, K:F.692, K:F.692, A:F.597, A:F.600, A:F.600 Hydrogen bonds: K:Y.681, K:Y.681 pi-Stacking: K:F.600, K:W.624, K:W.624 Metal complexes: K:H.621

4 x CLA: CHLOROPHYLL A(Non-covalent)

CLA.2: 26 residues within 4Å: Chain A: M.436, Y.440, A.441, V.444, I.448, F.454, F.495, L.549, W.550, K.553, M.570, F.597, Y.681 Chain C: L.55, I.56, A.59 Chain K: M.618, I.619, H.621, L.622, W.624, F.625 Ligands: GS0.1, GS0.72, CLA.74, BCL.86 19 PLIP interactions: 9 interactions with chain A, 7 interactions with chain K, 3 interactions with chain C, Hydrophobic interactions: A:Y.440, A:Y.440, A:A.441, A:V.444, A:F.454, A:F.495, A:K.553, A:F.597, A:Y.681, K:M.618, K:L.622, K:W.624, K:F.625, K:F.625, K:F.625, K:F.625, C:L.55, C:I.56, C:A.59 CLA.3: 24 residues within 4Å: Chain A: L.622, F.625, I.626, F.628, A.629, F.632, D.634, S.637, R.638, G.641, A.642, Q.645 Chain K: M.429, C.432, F.433, M.436, L.437, F.495, I.498, R.502, F.546, W.550 Ligands: LHG.17, CLA.73 17 PLIP interactions: 9 interactions with chain A, 7 interactions with chain K, 1 Ligand-Water interactions, Hydrophobic interactions: A:L.622, A:L.622, A:F.625, A:F.628, A:A.629, A:F.632, A:D.634, A:R.638, K:F.433, K:L.437, K:F.495, K:I.498, K:F.546, K:W.550, K:W.550 Hydrogen bonds: A:Q.645 Metal complexes: H2O.1 CLA.73: 25 residues within 4Å: Chain A: M.618, I.619, H.621, L.622, W.624, F.625, F.628 Chain K: M.436, Y.440, A.441, V.444, I.448, F.454, F.495, L.549, W.550, K.553, M.570, F.597, Y.681 Chain L: L.55, I.56 Ligands: GS0.1, CLA.3, GS0.72 20 PLIP interactions: 6 interactions with chain A, 4 interactions with chain L, 10 interactions with chain K, Hydrophobic interactions: A:L.622, A:W.624, A:F.625, A:F.625, A:F.625, A:F.628, L:L.55, L:L.55, L:L.55, L:I.56, K:Y.440, K:Y.440, K:A.441, K:V.444, K:F.454, K:F.495, K:K.553, K:F.597, K:Y.681 Hydrogen bonds: K:Y.440 CLA.74: 23 residues within 4Å: Chain A: C.432, F.433, M.436, L.437, F.495, I.498, R.502, F.546, W.550 Chain K: L.622, F.625, I.626, F.628, A.629, F.632, D.634, S.637, R.638, G.641, A.642, Q.645 Ligands: CLA.2, LHG.88 21 PLIP interactions: 9 interactions with chain A, 11 interactions with chain K, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.433, A:L.437, A:F.495, A:I.498, A:F.546, A:W.550, A:W.550, K:L.622, K:L.622, K:F.625, K:F.625, K:F.625, K:F.628, K:A.629, K:F.632, K:D.634 Hydrogen bonds: A:R.502, A:R.502, K:S.637, K:Q.645 Metal complexes: H2O.1

72 x BCL: BACTERIOCHLOROPHYLL A(Covalent)(Non-covalent)

BCL.4: 14 residues within 4Å: Chain A: F.65, V.75, G.78, H.79, L.82, M.275, A.278, F.279, H.282, L.283, I.286 Ligands: BCL.10, BCL.12, BCL.13 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:V.75, A:L.82, A:A.278, A:F.279, A:L.283, A:I.286 Hydrogen bonds: A:H.282 pi-Stacking: A:F.279 Metal complexes: A:H.79 BCL.5: 24 residues within 4Å: Chain A: A.268, H.270, A.277, S.280, V.281, T.284, A.285, Y.288, V.384, V.388, G.391, G.392, Y.394, L.395, I.410, W.411, I.412, K.414, G.415, L.500, A.504 Ligands: BCL.10, F39.16, LHG.18 14 PLIP interactions: 13 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:A.268, A:V.281, A:V.281, A:T.284, A:Y.288, A:V.388, A:L.395, A:W.411, A:W.411, A:W.411, A:K.414, A:L.500 Salt bridges: A:H.270 Metal complexes: H2O.1 BCL.6: 18 residues within 4Å: Chain A: L.83, L.86, G.87, M.90, Y.94, I.117, R.120, L.124, W.146, F.149, H.150, V.153, G.154, L.216, W.220 Ligands: BCL.9, BCL.10, BCL.12 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:L.83, A:L.86, A:L.124, A:W.146, A:F.149, A:L.216, A:W.220 Hydrogen bonds: A:Y.94 Salt bridges: A:R.120 Metal complexes: A:H.150 BCL.7: 16 residues within 4Å: Chain A: L.80, L.157, G.160, R.163, H.164, N.168, L.169, T.170, N.171, G.178, F.183, F.185, L.186, Y.212, L.215 Ligands: BCL.8 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:L.80, A:L.80, A:L.157, A:L.169, A:N.171, A:F.183, A:F.185, A:L.186, A:L.186, A:L.215 Hydrogen bonds: A:N.171 Salt bridges: A:R.163 Metal complexes: A:H.164 BCL.8: 23 residues within 4Å: Chain A: D.72, V.75, V.76, H.79, L.80, L.83, L.152, V.153, L.157, F.180, F.183, F.185, F.194, S.198, A.199, S.201, A.205, P.208, H.209, Y.212, L.216 Ligands: BCL.7, BCL.10 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:V.75, A:V.76, A:L.83, A:L.152, A:V.153, A:L.157, A:F.183, A:F.183, A:F.185, A:F.185, A:F.194, A:P.208, A:Y.212, A:L.216 Hydrogen bonds: A:H.79, A:A.199 Salt bridges: A:H.79 pi-Stacking: A:Y.212 Metal complexes: A:H.209 BCL.9: 20 residues within 4Å: Chain A: P.119, R.120, S.123, F.217, F.236, Q.237, T.238, I.239, S.241, E.242, M.245, S.246, F.249, L.293, F.306, Y.309, Y.310 Ligands: BCL.6, BCL.12, F39.16 11 PLIP interactions: 11 interactions with chain A, Hydrophobic interactions: A:F.236, A:I.239, A:E.242, A:F.306, A:F.306, A:F.306, A:F.306, A:Y.309, A:Y.310 pi-Cation interactions: A:R.120 Metal complexes: A:E.242 BCL.10: 19 residues within 4Å: Chain A: Y.202, K.203, A.205, L.206, H.209, L.216, G.219, W.220, A.267, L.271, N.272, H.282, A.285, I.286 Ligands: BCL.4, BCL.5, BCL.6, BCL.8, BCL.12 11 PLIP interactions: 11 interactions with chain A, Hydrophobic interactions: A:Y.202, A:A.205, A:L.206, A:L.216, A:W.220, A:L.271, A:H.282, A:A.285, A:I.286 Salt bridges: A:H.282 Metal complexes: A:H.282 BCL.11: 19 residues within 4Å: Chain A: Y.93, W.112, F.113, T.116, I.117, L.371, F.374, N.375, I.378, C.379, L.382, F.679, G.683, F.686, V.689, F.690 Ligands: BCL.12, BCL.13, BCL.15 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:W.112, A:F.113, A:T.116, A:L.371, A:F.374, A:I.378, A:L.382, A:F.679, A:F.690 BCL.12: 17 residues within 4Å: Chain A: L.86, M.90, Y.93, T.116, R.120, I.286, N.290, L.293, N.375, H.376, Y.383 Ligands: BCL.4, BCL.6, BCL.9, BCL.10, BCL.11, F39.16 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:L.86, A:I.286 Metal complexes: A:H.376 BCL.13: 23 residues within 4Å: Chain A: W.61, Y.62, Q.63, I.64, F.65, D.66, T.67, K.276, F.279, L.283, L.382, Y.383, A.386, Y.389, H.390, Q.393, Q.541, W.545, M.548, L.675, F.679 Ligands: BCL.4, BCL.11 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:W.61, A:Y.62, A:Q.63, A:T.67, A:F.279, A:L.283, A:Y.383, A:A.386, A:W.545, A:F.679, A:F.679 Hydrogen bonds: A:I.64, A:F.65 Salt bridges: A:K.276 pi-Cation interactions: A:K.276 Metal complexes: A:H.390 BCL.14: 17 residues within 4Å: Chain A: L.431, F.433, A.434, T.435, S.438, P.467, L.468, F.471, D.482, W.483, A.486, H.487, T.490 Chain C: M.20, L.23, F.24, V.27 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain C, Hydrophobic interactions: A:F.433, A:T.435, A:L.468, A:F.471, A:F.471, A:W.483, A:T.490, C:L.23, C:F.24, C:V.27 Hydrogen bonds: A:L.468 Salt bridges: A:H.487 pi-Stacking: A:W.483 Metal complexes: A:H.487 BCL.15: 16 residues within 4Å: Chain A: D.110, N.111, W.112, F.113, Y.321, G.322, H.612, T.615, I.616, I.619, M.687, F.690 Chain K: I.453, F.454 Chain L: L.96 Ligands: BCL.11 15 PLIP interactions: 12 interactions with chain A, 2 interactions with chain K, 1 interactions with chain L, Hydrophobic interactions: A:F.113, A:Y.321, A:Y.321, A:I.616, A:I.616, A:I.619, A:F.690, K:F.454, K:F.454, L:L.96 Hydrogen bonds: A:W.112, A:Y.321 Salt bridges: A:H.612 pi-Stacking: A:H.612 Metal complexes: A:H.612 BCL.24: 22 residues within 4Å: Chain E: V.104, V.106, F.109, H.111, F.113, M.150, V.152, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, V.205, G.219, S.221, W.223 Chain F: Y.125 Ligands: BCL.25, BCL.40 17 PLIP interactions: 17 interactions with chain E, Hydrophobic interactions: E:V.104, E:V.104, E:F.113, E:V.152, E:V.152, E:W.163, E:T.166, E:I.180, E:F.183, E:F.183, E:W.184, E:W.184, E:V.205, E:W.223, E:W.223, E:W.223 Metal complexes: E:H.111 BCL.25: 26 residues within 4Å: Chain E: P.43, L.44, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.106, F.113, F.115, I.148, F.183, W.184, I.186 Chain F: Y.125, V.130, V.134, P.137, I.138, Q.141 Ligands: BCL.24, BCL.26, BCL.29, BCL.30 21 PLIP interactions: 18 interactions with chain E, 2 interactions with chain F, 1 Ligand-Water interactions, Hydrophobic interactions: E:P.43, E:L.44, E:L.44, E:F.71, E:V.75, E:V.75, E:N.80, E:L.82, E:I.84, E:V.106, E:F.113, E:F.113, E:F.115, E:F.115, E:I.148, E:F.183, E:I.186 Hydrogen bonds: E:S.73, F:I.138, F:Q.141 Metal complexes: H2O.1 BCL.26: 24 residues within 4Å: Chain E: A.12, S.14, Y.16, V.36, P.39, P.40, A.41, S.42, A.189, F.258, S.260, I.265, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.25, BCL.27, BCL.28, BCL.29, BCL.30 14 PLIP interactions: 14 interactions with chain E, Hydrophobic interactions: E:A.12, E:V.36, E:A.189, E:F.258, E:I.265, E:V.267, E:V.301, E:N.305, E:F.307, E:F.307 Hydrogen bonds: E:Y.16, E:A.41, E:S.42 Metal complexes: E:H.298 BCL.27: 25 residues within 4Å: Chain E: Y.16, I.18, V.30, A.32, C.49, V.51, A.256, G.257, F.258, I.287, L.288, H.290, P.291, P.294, H.298, L.313, Y.345, W.348, V.349, C.353, F.360, I.362 Ligands: BCL.26, BCL.28, BCL.30 16 PLIP interactions: 16 interactions with chain E, Hydrophobic interactions: E:Y.16, E:Y.16, E:I.18, E:V.30, E:A.32, E:A.256, E:F.258, E:F.258, E:L.288, E:P.291, E:P.294, E:H.298, E:W.348, E:W.348, E:V.349 Metal complexes: E:H.290 BCL.28: 22 residues within 4Å: Chain E: V.30, L.53, V.55, F.71, I.88, S.235, R.238, E.241, L.242, F.243, P.244, L.248, V.254, V.269, F.273, P.274, L.288, P.291 Ligands: BCL.26, BCL.27, BCL.29, BCL.30 12 PLIP interactions: 12 interactions with chain E, Hydrophobic interactions: E:L.53, E:F.71, E:I.88, E:L.242, E:P.244, E:V.269, E:F.273, E:F.273, E:F.273, E:L.288 Salt bridges: E:R.238 Metal complexes: E:L.242 BCL.29: 27 residues within 4Å: Chain E: L.53, V.55, A.69, F.71, I.84, A.86, I.88, R.96, I.97, S.98, G.117, S.118, V.119, H.146, I.148, W.184, F.225, H.227, S.235, W.239, L.242, V.254, F.273 Ligands: BCL.25, BCL.26, BCL.28, BCL.30 15 PLIP interactions: 15 interactions with chain E, Hydrophobic interactions: E:L.53, E:L.53, E:V.55, E:A.69, E:F.71, E:I.84, E:V.119, E:F.225, E:W.239, E:L.242, E:V.254, E:F.273 Hydrogen bonds: E:R.96 pi-Stacking: E:F.225 Metal complexes: E:H.146 BCL.30: 19 residues within 4Å: Chain E: A.41, S.42, F.185, P.188, A.189, A.192, L.193, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Ligands: BCL.25, BCL.26, BCL.27, BCL.28, BCL.29 11 PLIP interactions: 11 interactions with chain E, Hydrophobic interactions: E:A.41, E:F.185, E:F.185, E:P.188, E:A.192, E:L.193, E:P.294, E:P.294 Hydrogen bonds: E:Q.198 pi-Cation interactions: E:H.297 Metal complexes: E:H.297 BCL.31: 17 residues within 4Å: Chain E: L.122, F.123, Y.124, Y.125, R.126 Chain G: D.161, T.162, T.166, A.169, S.172, T.173, A.175, F.176, W.179, I.180, F.183 Ligands: BCL.42 11 PLIP interactions: 6 interactions with chain G, 5 interactions with chain E, Hydrophobic interactions: G:T.162, G:T.166, G:F.176, G:F.176, G:F.183, E:Y.124, E:Y.124, E:Y.125 Hydrogen bonds: G:S.172, E:R.126 Metal complexes: E:Y.124 BCL.32: 26 residues within 4Å: Chain E: Y.125, V.130, V.134, P.137, I.138, Y.139, Q.141 Chain G: P.43, L.44, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.106, F.113, F.115, F.183, W.184, I.186 Ligands: BCL.42, BCL.43, BCL.46, BCL.47 18 PLIP interactions: 4 interactions with chain E, 13 interactions with chain G, 1 Ligand-Water interactions, Hydrogen bonds: E:Y.125, E:I.138, E:Y.139, E:Q.141, G:S.73 Hydrophobic interactions: G:P.43, G:L.44, G:F.71, G:V.75, G:V.75, G:N.80, G:L.82, G:L.82, G:I.84, G:F.113, G:F.115, G:I.186 Metal complexes: H2O.1 BCL.33: 26 residues within 4Å: Chain F: V.104, V.106, F.109, H.111, F.113, M.150, V.152, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, V.205, G.219, S.221, W.223 Chain G: Y.125, S.127, A.129, V.130, N.133 Ligands: BCL.34, BCL.41 17 PLIP interactions: 17 interactions with chain F, Hydrophobic interactions: F:V.104, F:V.104, F:F.113, F:V.152, F:V.152, F:W.163, F:T.166, F:I.180, F:F.183, F:F.183, F:W.184, F:W.184, F:V.205, F:W.223, F:W.223, F:W.223 Metal complexes: F:H.111 BCL.34: 25 residues within 4Å: Chain F: P.43, L.44, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.106, F.113, F.115, I.148, F.183, W.184, I.186 Chain G: Y.125, V.134, P.137, I.138, Y.139 Ligands: BCL.33, BCL.35, BCL.38, BCL.39 21 PLIP interactions: 18 interactions with chain F, 2 interactions with chain G, 1 Ligand-Water interactions, Hydrophobic interactions: F:P.43, F:L.44, F:L.44, F:F.71, F:V.75, F:V.75, F:N.80, F:L.82, F:I.84, F:V.106, F:F.113, F:F.113, F:F.115, F:F.115, F:I.148, F:F.183, F:I.186 Hydrogen bonds: F:S.73, G:I.138, G:Y.139 Metal complexes: H2O.1 BCL.35: 24 residues within 4Å: Chain F: A.12, S.14, Y.16, V.36, P.39, P.40, A.41, S.42, A.189, F.258, S.260, I.265, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.34, BCL.36, BCL.37, BCL.38, BCL.39 14 PLIP interactions: 14 interactions with chain F, Hydrophobic interactions: F:A.12, F:V.36, F:A.189, F:F.258, F:I.265, F:I.265, F:V.267, F:V.301, F:N.305, F:F.307, F:F.307 Hydrogen bonds: F:A.41, F:S.42 Metal complexes: F:H.298 BCL.36: 25 residues within 4Å: Chain F: Y.16, I.18, V.30, A.32, C.49, V.51, A.256, G.257, F.258, I.287, L.288, H.290, P.291, P.294, H.298, L.313, Y.345, W.348, V.349, C.353, F.360, I.362 Ligands: BCL.35, BCL.37, BCL.39 17 PLIP interactions: 17 interactions with chain F, Hydrophobic interactions: F:Y.16, F:Y.16, F:I.18, F:V.30, F:A.32, F:A.256, F:F.258, F:F.258, F:L.288, F:P.291, F:P.294, F:H.298, F:W.348, F:W.348, F:V.349 Hydrogen bonds: F:Y.345 Metal complexes: F:H.290 BCL.37: 22 residues within 4Å: Chain F: V.30, L.53, V.55, F.71, I.88, S.235, R.238, E.241, L.242, F.243, P.244, L.248, V.254, V.269, F.273, P.274, L.288, P.291 Ligands: BCL.35, BCL.36, BCL.38, BCL.39 12 PLIP interactions: 12 interactions with chain F, Hydrophobic interactions: F:L.53, F:F.71, F:I.88, F:L.242, F:P.244, F:V.269, F:F.273, F:F.273, F:F.273, F:L.288 Salt bridges: F:R.238 Metal complexes: F:L.242 BCL.38: 27 residues within 4Å: Chain F: L.53, V.55, A.69, F.71, I.84, A.86, I.88, R.96, I.97, S.98, G.117, S.118, V.119, H.146, I.148, W.184, F.225, H.227, S.235, W.239, L.242, V.254, F.273 Ligands: BCL.34, BCL.35, BCL.37, BCL.39 15 PLIP interactions: 15 interactions with chain F, Hydrophobic interactions: F:L.53, F:L.53, F:V.55, F:A.69, F:F.71, F:I.84, F:V.119, F:F.225, F:W.239, F:L.242, F:V.254, F:F.273 Hydrogen bonds: F:R.96 pi-Stacking: F:F.225 Metal complexes: F:H.146 BCL.39: 20 residues within 4Å: Chain F: A.41, S.42, F.185, I.186, P.188, A.189, A.192, L.193, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Ligands: BCL.34, BCL.35, BCL.36, BCL.37, BCL.38 11 PLIP interactions: 11 interactions with chain F, Hydrophobic interactions: F:A.41, F:F.185, F:F.185, F:P.188, F:A.192, F:L.193, F:P.294, F:P.294 Hydrogen bonds: F:Q.198 pi-Cation interactions: F:H.297 Metal complexes: F:H.297 BCL.40: 17 residues within 4Å: Chain E: D.161, T.162, T.166, A.169, S.172, T.173, A.175, F.176, W.179, I.180, F.183 Chain F: L.122, F.123, Y.124, Y.125, R.126 Ligands: BCL.24 13 PLIP interactions: 5 interactions with chain F, 8 interactions with chain E, Hydrophobic interactions: F:Y.124, F:Y.124, F:Y.125, E:T.162, E:T.166, E:A.169, E:F.176, E:I.180, E:F.183, E:F.183 Hydrogen bonds: F:R.126, E:S.172 Metal complexes: F:Y.124 BCL.41: 17 residues within 4Å: Chain F: D.161, T.162, G.165, T.166, A.169, S.172, T.173, A.175, F.176, W.179, I.180, F.183 Chain G: L.122, Y.124, Y.125, R.126 Ligands: BCL.33 12 PLIP interactions: 3 interactions with chain G, 9 interactions with chain F, Hydrophobic interactions: G:Y.124, G:Y.125, F:T.173, F:F.176, F:F.176, F:I.180, F:I.180, F:F.183, F:F.183 Metal complexes: G:Y.124 Hydrogen bonds: F:S.172 pi-Stacking: F:F.183 BCL.42: 24 residues within 4Å: Chain E: Y.125, S.127, A.129, V.130 Chain G: V.104, V.106, F.109, H.111, F.113, M.150, V.152, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, V.205, S.221, W.223 Ligands: BCL.31, BCL.32 20 PLIP interactions: 18 interactions with chain G, 2 interactions with chain E, Hydrophobic interactions: G:V.104, G:V.104, G:F.113, G:V.152, G:V.152, G:L.159, G:W.163, G:T.166, G:I.180, G:F.183, G:F.183, G:W.184, G:W.184, G:V.205, G:W.223, G:W.223, G:W.223, E:Y.125, E:V.130 Metal complexes: G:H.111 BCL.43: 23 residues within 4Å: Chain G: A.12, S.14, Y.16, V.36, P.39, P.40, A.41, A.189, F.258, S.260, I.265, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.32, BCL.44, BCL.45, BCL.46, BCL.47 10 PLIP interactions: 10 interactions with chain G, Hydrophobic interactions: G:A.12, G:V.36, G:A.189, G:F.258, G:I.265, G:V.301, G:N.305, G:F.307 Hydrogen bonds: G:A.41 Metal complexes: G:H.298 BCL.44: 25 residues within 4Å: Chain G: Y.16, I.18, V.30, A.32, C.49, V.51, A.256, G.257, F.258, I.287, L.288, H.290, P.291, P.294, H.298, L.313, Y.345, W.348, V.349, C.353, F.360, I.362 Ligands: BCL.43, BCL.45, BCL.47 16 PLIP interactions: 16 interactions with chain G, Hydrophobic interactions: G:Y.16, G:Y.16, G:I.18, G:V.30, G:A.32, G:A.256, G:F.258, G:F.258, G:L.288, G:P.291, G:P.294, G:H.298, G:W.348, G:W.348, G:V.349 Metal complexes: G:H.290 BCL.45: 20 residues within 4Å: Chain G: V.30, V.55, F.71, I.88, S.235, R.238, E.241, L.242, F.243, P.244, V.254, V.269, F.273, P.274, L.288, P.291 Ligands: BCL.43, BCL.44, BCL.46, BCL.47 11 PLIP interactions: 11 interactions with chain G, Hydrophobic interactions: G:F.71, G:I.88, G:L.242, G:P.244, G:V.269, G:F.273, G:F.273, G:F.273, G:L.288 Salt bridges: G:R.238 Metal complexes: G:L.242 BCL.46: 28 residues within 4Å: Chain G: L.53, V.55, A.69, F.71, I.84, A.86, I.88, R.96, I.97, S.98, G.117, S.118, V.119, H.146, I.148, W.184, F.225, H.227, S.235, W.239, L.242, A.252, V.254, F.273 Ligands: BCL.32, BCL.43, BCL.45, BCL.47 16 PLIP interactions: 16 interactions with chain G, Hydrophobic interactions: G:L.53, G:L.53, G:V.55, G:A.69, G:F.71, G:I.84, G:V.119, G:F.225, G:W.239, G:L.242, G:A.252, G:V.254, G:F.273 Hydrogen bonds: G:R.96 pi-Stacking: G:F.225 Metal complexes: G:H.146 BCL.47: 20 residues within 4Å: Chain G: A.41, L.82, F.185, I.186, P.188, A.189, A.192, L.193, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Ligands: BCL.32, BCL.43, BCL.44, BCL.45, BCL.46 12 PLIP interactions: 12 interactions with chain G, Hydrophobic interactions: G:L.82, G:F.185, G:F.185, G:I.186, G:A.189, G:A.192, G:L.193, G:P.294, G:P.294 Hydrogen bonds: G:Q.198 pi-Cation interactions: G:H.297 Metal complexes: G:H.297 BCL.48: 23 residues within 4Å: Chain H: V.104, V.106, F.109, H.111, F.113, M.150, V.152, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, V.205, G.219, S.221, W.223 Chain I: Y.125, S.127 Ligands: BCL.49, BCL.63 17 PLIP interactions: 17 interactions with chain H, Hydrophobic interactions: H:V.104, H:V.104, H:F.113, H:V.152, H:V.152, H:W.163, H:T.166, H:I.180, H:F.183, H:F.183, H:W.184, H:W.184, H:V.205, H:W.223, H:W.223, H:W.223 Metal complexes: H:H.111 BCL.49: 26 residues within 4Å: Chain H: P.43, L.44, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.106, F.113, F.115, I.148, F.183, W.184, I.186 Chain I: Y.125, V.130, V.134, P.137, I.138, Q.141 Ligands: BCL.48, BCL.50, BCL.53, BCL.54 21 PLIP interactions: 18 interactions with chain H, 2 interactions with chain I, 1 Ligand-Water interactions, Hydrophobic interactions: H:P.43, H:L.44, H:L.44, H:F.71, H:V.75, H:V.75, H:N.80, H:L.82, H:I.84, H:V.106, H:F.113, H:F.113, H:F.115, H:F.115, H:I.148, H:F.183, H:I.186 Hydrogen bonds: H:S.73, I:I.138, I:Q.141 Metal complexes: H2O.1 BCL.50: 24 residues within 4Å: Chain H: A.12, S.14, Y.16, V.36, P.39, P.40, A.41, S.42, A.189, F.258, S.260, I.265, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.49, BCL.51, BCL.52, BCL.53, BCL.54 15 PLIP interactions: 15 interactions with chain H, Hydrophobic interactions: H:A.12, H:V.36, H:A.189, H:F.258, H:I.265, H:I.265, H:V.267, H:V.301, H:N.305, H:F.307, H:F.307 Hydrogen bonds: H:Y.16, H:A.41, H:S.42 Metal complexes: H:H.298 BCL.51: 25 residues within 4Å: Chain H: Y.16, I.18, V.30, A.32, C.49, V.51, A.256, G.257, F.258, I.287, L.288, H.290, P.291, P.294, H.298, L.313, Y.345, W.348, V.349, C.353, F.360, I.362 Ligands: BCL.50, BCL.52, BCL.54 16 PLIP interactions: 16 interactions with chain H, Hydrophobic interactions: H:Y.16, H:Y.16, H:I.18, H:V.30, H:A.32, H:A.256, H:F.258, H:F.258, H:L.288, H:P.291, H:P.294, H:H.298, H:W.348, H:W.348, H:V.349 Metal complexes: H:H.290 BCL.52: 22 residues within 4Å: Chain H: V.30, L.53, V.55, F.71, I.88, S.235, R.238, E.241, L.242, F.243, P.244, L.248, V.254, V.269, F.273, P.274, L.288, P.291 Ligands: BCL.50, BCL.51, BCL.53, BCL.54 12 PLIP interactions: 12 interactions with chain H, Hydrophobic interactions: H:L.53, H:F.71, H:I.88, H:L.242, H:P.244, H:V.269, H:F.273, H:F.273, H:F.273, H:L.288 Salt bridges: H:R.238 Metal complexes: H:L.242 BCL.53: 27 residues within 4Å: Chain H: L.53, V.55, A.69, F.71, I.84, A.86, I.88, R.96, I.97, S.98, G.117, S.118, V.119, H.146, I.148, W.184, F.225, H.227, S.235, W.239, L.242, V.254, F.273 Ligands: BCL.49, BCL.50, BCL.52, BCL.54 15 PLIP interactions: 15 interactions with chain H, Hydrophobic interactions: H:L.53, H:L.53, H:V.55, H:A.69, H:F.71, H:I.84, H:V.119, H:F.225, H:W.239, H:L.242, H:V.254, H:F.273 Hydrogen bonds: H:R.96 pi-Stacking: H:F.225 Metal complexes: H:H.146 BCL.54: 19 residues within 4Å: Chain H: A.41, S.42, F.185, P.188, A.189, A.192, L.193, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Ligands: BCL.49, BCL.50, BCL.51, BCL.52, BCL.53 11 PLIP interactions: 11 interactions with chain H, Hydrophobic interactions: H:A.41, H:F.185, H:F.185, H:P.188, H:A.192, H:L.193, H:P.294, H:P.294 Hydrogen bonds: H:Q.198 pi-Cation interactions: H:H.297 Metal complexes: H:H.297 BCL.55: 17 residues within 4Å: Chain H: L.122, F.123, Y.124, Y.125, R.126 Chain J: D.161, T.162, T.166, A.169, S.172, T.173, A.175, F.176, W.179, I.180, F.183 Ligands: BCL.65 11 PLIP interactions: 6 interactions with chain J, 5 interactions with chain H, Hydrophobic interactions: J:T.162, J:T.166, J:F.176, J:F.176, J:F.183, H:Y.124, H:Y.124, H:Y.125 Hydrogen bonds: J:S.172, H:R.126 Metal complexes: H:Y.124 BCL.56: 26 residues within 4Å: Chain I: V.104, V.106, F.109, H.111, F.113, M.150, V.152, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, V.205, G.219, S.221, W.223 Chain J: Y.125, S.127, A.129, V.130, N.133 Ligands: BCL.57, BCL.64 17 PLIP interactions: 17 interactions with chain I, Hydrophobic interactions: I:V.104, I:V.104, I:F.113, I:V.152, I:V.152, I:W.163, I:T.166, I:I.180, I:F.183, I:F.183, I:W.184, I:W.184, I:V.205, I:W.223, I:W.223, I:W.223 Metal complexes: I:H.111 BCL.57: 25 residues within 4Å: Chain I: P.43, L.44, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.106, F.113, F.115, I.148, F.183, W.184, I.186 Chain J: Y.125, V.134, P.137, I.138, Y.139 Ligands: BCL.56, BCL.58, BCL.61, BCL.62 21 PLIP interactions: 18 interactions with chain I, 2 interactions with chain J, 1 Ligand-Water interactions, Hydrophobic interactions: I:P.43, I:L.44, I:L.44, I:F.71, I:V.75, I:V.75, I:N.80, I:L.82, I:I.84, I:V.106, I:F.113, I:F.113, I:F.115, I:F.115, I:I.148, I:F.183, I:I.186 Hydrogen bonds: I:S.73, J:I.138, J:Y.139 Metal complexes: H2O.1 BCL.58: 24 residues within 4Å: Chain I: A.12, S.14, Y.16, V.36, P.39, P.40, A.41, S.42, A.189, F.258, S.260, I.265, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.57, BCL.59, BCL.60, BCL.61, BCL.62 14 PLIP interactions: 14 interactions with chain I, Hydrophobic interactions: I:A.12, I:V.36, I:A.189, I:F.258, I:I.265, I:I.265, I:V.267, I:V.301, I:N.305, I:F.307, I:F.307 Hydrogen bonds: I:A.41, I:S.42 Metal complexes: I:H.298 BCL.59: 25 residues within 4Å: Chain I: Y.16, I.18, V.30, A.32, C.49, V.51, A.256, G.257, F.258, I.287, L.288, H.290, P.291, P.294, H.298, L.313, Y.345, W.348, V.349, C.353, F.360, I.362 Ligands: BCL.58, BCL.60, BCL.62 17 PLIP interactions: 17 interactions with chain I, Hydrophobic interactions: I:Y.16, I:Y.16, I:I.18, I:V.30, I:A.32, I:A.256, I:F.258, I:F.258, I:L.288, I:P.291, I:P.294, I:H.298, I:W.348, I:W.348, I:V.349 Hydrogen bonds: I:Y.345 Metal complexes: I:H.290 BCL.60: 22 residues within 4Å: Chain I: V.30, L.53, V.55, F.71, I.88, S.235, R.238, E.241, L.242, F.243, P.244, L.248, V.254, V.269, F.273, P.274, L.288, P.291 Ligands: BCL.58, BCL.59, BCL.61, BCL.62 12 PLIP interactions: 12 interactions with chain I, Hydrophobic interactions: I:L.53, I:F.71, I:I.88, I:L.242, I:P.244, I:V.269, I:F.273, I:F.273, I:F.273, I:L.288 Salt bridges: I:R.238 Metal complexes: I:L.242 BCL.61: 27 residues within 4Å: Chain I: L.53, V.55, A.69, F.71, I.84, A.86, I.88, R.96, I.97, S.98, G.117, S.118, V.119, H.146, I.148, W.184, F.225, H.227, S.235, W.239, L.242, V.254, F.273 Ligands: BCL.57, BCL.58, BCL.60, BCL.62 15 PLIP interactions: 15 interactions with chain I, Hydrophobic interactions: I:L.53, I:L.53, I:V.55, I:A.69, I:F.71, I:I.84, I:V.119, I:F.225, I:W.239, I:L.242, I:V.254, I:F.273 Hydrogen bonds: I:R.96 pi-Stacking: I:F.225 Metal complexes: I:H.146 BCL.62: 20 residues within 4Å: Chain I: A.41, S.42, F.185, I.186, P.188, A.189, A.192, L.193, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Ligands: BCL.57, BCL.58, BCL.59, BCL.60, BCL.61 11 PLIP interactions: 11 interactions with chain I, Hydrophobic interactions: I:A.41, I:F.185, I:F.185, I:P.188, I:A.192, I:L.193, I:P.294, I:P.294 Hydrogen bonds: I:Q.198 pi-Cation interactions: I:H.297 Metal complexes: I:H.297 BCL.63: 18 residues within 4Å: Chain H: D.161, T.162, T.166, A.169, S.172, T.173, A.175, F.176, W.179, I.180, F.183 Chain I: L.122, F.123, Y.124, Y.125, R.126, S.127 Ligands: BCL.48 13 PLIP interactions: 8 interactions with chain H, 5 interactions with chain I, Hydrophobic interactions: H:T.162, H:T.166, H:A.169, H:F.176, H:I.180, H:F.183, H:F.183, I:Y.124, I:Y.124, I:Y.125 Hydrogen bonds: H:S.172, I:R.126 Metal complexes: I:Y.124 BCL.64: 17 residues within 4Å: Chain I: D.161, T.162, G.165, T.166, A.169, S.172, T.173, A.175, F.176, W.179, I.180, F.183 Chain J: L.122, Y.124, Y.125, R.126 Ligands: BCL.56 12 PLIP interactions: 3 interactions with chain J, 9 interactions with chain I, Hydrophobic interactions: J:Y.124, J:Y.125, I:T.173, I:F.176, I:F.176, I:I.180, I:I.180, I:F.183, I:F.183 Metal complexes: J:Y.124 Hydrogen bonds: I:S.172 pi-Stacking: I:F.183 BCL.65: 24 residues within 4Å: Chain H: Y.125, S.127, A.129, V.130 Chain J: V.104, V.106, F.109, H.111, F.113, M.150, V.152, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, V.205, S.221, W.223 Ligands: BCL.55, BCL.66 20 PLIP interactions: 18 interactions with chain J, 2 interactions with chain H, Hydrophobic interactions: J:V.104, J:V.104, J:F.113, J:V.152, J:V.152, J:L.159, J:W.163, J:T.166, J:I.180, J:F.183, J:F.183, J:W.184, J:W.184, J:V.205, J:W.223, J:W.223, J:W.223, H:Y.125, H:V.130 Metal complexes: J:H.111 BCL.66: 26 residues within 4Å: Chain H: Y.125, V.130, V.134, P.137, I.138, Y.139, Q.141 Chain J: P.43, L.44, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.106, F.113, F.115, F.183, W.184, I.186 Ligands: BCL.65, BCL.67, BCL.70, BCL.71 18 PLIP interactions: 13 interactions with chain J, 4 interactions with chain H, 1 Ligand-Water interactions, Hydrophobic interactions: J:P.43, J:L.44, J:F.71, J:V.75, J:V.75, J:N.80, J:L.82, J:L.82, J:I.84, J:F.113, J:F.115, J:I.186 Hydrogen bonds: J:S.73, H:Y.125, H:I.138, H:Y.139, H:Q.141 Metal complexes: H2O.1 BCL.67: 23 residues within 4Å: Chain J: A.12, S.14, Y.16, V.36, P.39, P.40, A.41, A.189, F.258, S.260, I.265, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.66, BCL.68, BCL.69, BCL.70, BCL.71 10 PLIP interactions: 10 interactions with chain J, Hydrophobic interactions: J:A.12, J:V.36, J:A.189, J:F.258, J:I.265, J:V.301, J:N.305, J:F.307 Hydrogen bonds: J:A.41 Metal complexes: J:H.298 BCL.68: 25 residues within 4Å: Chain J: Y.16, I.18, V.30, A.32, C.49, V.51, A.256, G.257, F.258, I.287, L.288, H.290, P.291, P.294, H.298, L.313, Y.345, W.348, V.349, C.353, F.360, I.362 Ligands: BCL.67, BCL.69, BCL.71 16 PLIP interactions: 16 interactions with chain J, Hydrophobic interactions: J:Y.16, J:Y.16, J:I.18, J:V.30, J:A.32, J:A.256, J:F.258, J:F.258, J:L.288, J:P.291, J:P.294, J:H.298, J:W.348, J:W.348, J:V.349 Metal complexes: J:H.290 BCL.69: 20 residues within 4Å: Chain J: V.30, V.55, F.71, I.88, S.235, R.238, E.241, L.242, F.243, P.244, V.254, V.269, F.273, P.274, L.288, P.291 Ligands: BCL.67, BCL.68, BCL.70, BCL.71 11 PLIP interactions: 11 interactions with chain J, Hydrophobic interactions: J:F.71, J:I.88, J:L.242, J:P.244, J:V.269, J:F.273, J:F.273, J:F.273, J:L.288 Salt bridges: J:R.238 Metal complexes: J:L.242 BCL.70: 28 residues within 4Å: Chain J: L.53, V.55, A.69, F.71, I.84, A.86, I.88, R.96, I.97, S.98, G.117, S.118, V.119, H.146, I.148, W.184, F.225, H.227, S.235, W.239, L.242, A.252, V.254, F.273 Ligands: BCL.66, BCL.67, BCL.69, BCL.71 16 PLIP interactions: 16 interactions with chain J, Hydrophobic interactions: J:L.53, J:L.53, J:V.55, J:A.69, J:F.71, J:I.84, J:V.119, J:F.225, J:W.239, J:L.242, J:A.252, J:V.254, J:F.273 Hydrogen bonds: J:R.96 pi-Stacking: J:F.225 Metal complexes: J:H.146 BCL.71: 20 residues within 4Å: Chain J: A.41, L.82, F.185, I.186, P.188, A.189, A.192, L.193, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Ligands: BCL.66, BCL.67, BCL.68, BCL.69, BCL.70 12 PLIP interactions: 12 interactions with chain J, Hydrophobic interactions: J:L.82, J:F.185, J:F.185, J:I.186, J:A.189, J:A.192, J:L.193, J:P.294, J:P.294 Hydrogen bonds: J:Q.198 pi-Cation interactions: J:H.297 Metal complexes: J:H.297 BCL.75: 15 residues within 4Å: Chain C: F.78 Chain K: F.65, V.75, G.78, H.79, L.82, M.275, A.278, F.279, H.282, L.283, I.286 Ligands: BCL.81, BCL.83, BCL.84 10 PLIP interactions: 10 interactions with chain K, Hydrophobic interactions: K:V.75, K:L.82, K:A.278, K:F.279, K:F.279, K:H.282, K:L.283, K:I.286 pi-Stacking: K:F.279 Metal complexes: K:H.79 BCL.76: 24 residues within 4Å: Chain K: H.270, A.277, S.280, V.281, T.284, A.285, Y.288, V.384, V.388, G.391, G.392, Y.394, L.395, W.411, I.412, K.414, G.415, I.424, L.500, A.504, F.505 Ligands: BCL.81, F39.87, LHG.89 19 PLIP interactions: 18 interactions with chain K, 1 Ligand-Water interactions, Hydrophobic interactions: K:V.281, K:V.281, K:T.284, K:Y.288, K:Y.288, K:V.388, K:L.395, K:W.411, K:W.411, K:W.411, K:I.412, K:K.414, K:K.414, K:I.424, K:L.500, K:F.505 Hydrogen bonds: K:Y.288 Salt bridges: K:H.270 Metal complexes: H2O.1 BCL.77: 20 residues within 4Å: Chain K: L.83, L.86, G.87, M.90, Y.94, I.117, R.120, L.124, W.146, F.149, H.150, V.153, G.154, M.213, F.217, W.220, I.289 Ligands: BCL.80, BCL.81, BCL.83 12 PLIP interactions: 12 interactions with chain K, Hydrophobic interactions: K:L.83, K:L.86, K:L.124, K:W.146, K:F.149, K:F.217, K:W.220, K:W.220, K:W.220, K:I.289 Salt bridges: K:R.120 Metal complexes: K:H.150 BCL.78: 18 residues within 4Å: Chain K: L.80, L.157, G.160, R.163, H.164, N.168, L.169, T.170, N.171, G.178, N.179, F.183, F.185, L.186, Y.212, L.215, L.216 Ligands: BCL.79 11 PLIP interactions: 11 interactions with chain K, Hydrophobic interactions: K:L.80, K:L.157, K:L.169, K:L.169, K:F.183, K:F.183, K:F.185, K:L.186, K:L.215, K:L.216 Metal complexes: K:H.164 BCL.79: 22 residues within 4Å: Chain K: D.72, V.75, V.76, H.79, L.80, L.83, V.153, L.157, F.180, F.183, F.185, F.194, S.198, A.199, S.201, P.208, H.209, Y.212, M.213, L.216 Ligands: BCL.78, BCL.81 18 PLIP interactions: 18 interactions with chain K, Hydrophobic interactions: K:V.75, K:V.76, K:L.83, K:V.153, K:L.157, K:F.180, K:F.183, K:F.185, K:F.185, K:F.194, K:A.199, K:Y.212, K:Y.212, K:L.216 Hydrogen bonds: K:A.199 Salt bridges: K:H.79 pi-Stacking: K:Y.212 Metal complexes: K:H.209 BCL.80: 20 residues within 4Å: Chain K: P.119, R.120, S.123, F.217, F.236, Q.237, T.238, I.239, S.241, E.242, M.245, S.246, F.249, L.293, F.306, Y.309, Y.310 Ligands: BCL.77, BCL.83, F39.87 12 PLIP interactions: 12 interactions with chain K, Hydrophobic interactions: K:F.236, K:I.239, K:E.242, K:F.306, K:F.306, K:F.306, K:F.306, K:Y.309, K:Y.310 Hydrogen bonds: K:Y.310 pi-Cation interactions: K:R.120 Metal complexes: K:E.242 BCL.81: 22 residues within 4Å: Chain K: Y.202, K.203, A.205, L.206, H.209, M.213, L.216, G.219, W.220, V.223, P.265, A.267, L.271, N.272, H.282, A.285, I.286 Ligands: BCL.75, BCL.76, BCL.77, BCL.79, BCL.83 13 PLIP interactions: 13 interactions with chain K, Hydrophobic interactions: K:Y.202, K:A.205, K:L.206, K:W.220, K:V.223, K:P.265, K:L.271, K:H.282, K:A.285, K:I.286 Hydrogen bonds: K:H.209 Salt bridges: K:H.282 Metal complexes: K:H.282 BCL.82: 18 residues within 4Å: Chain K: Y.93, W.112, F.113, T.116, I.117, L.371, F.374, N.375, I.378, L.382, F.679, G.683, F.686, V.689, F.690 Ligands: BCL.83, BCL.84, BCL.86 12 PLIP interactions: 12 interactions with chain K, Hydrophobic interactions: K:W.112, K:F.113, K:T.116, K:L.371, K:F.374, K:I.378, K:L.382, K:F.679, K:F.679, K:F.686, K:F.690 Hydrogen bonds: K:Y.93 BCL.83: 18 residues within 4Å: Chain K: L.86, M.90, Y.93, T.116, R.120, I.286, N.290, L.293, N.375, H.376, C.379, Y.383 Ligands: BCL.75, BCL.77, BCL.80, BCL.81, BCL.82, F39.87 6 PLIP interactions: 6 interactions with chain K, Hydrophobic interactions: K:L.86, K:I.286, K:L.293, K:Y.383 Hydrogen bonds: K:Y.383 Metal complexes: K:H.376 BCL.84: 23 residues within 4Å: Chain K: W.61, Y.62, Q.63, I.64, F.65, D.66, T.67, K.276, F.279, L.283, L.382, Y.383, A.386, Y.389, H.390, Q.393, Q.541, W.545, M.548, L.675, F.679 Ligands: BCL.75, BCL.82 15 PLIP interactions: 15 interactions with chain K, Hydrophobic interactions: K:W.61, K:Y.62, K:Q.63, K:F.65, K:F.65, K:T.67, K:F.279, K:L.283, K:Y.383, K:A.386, K:W.545 Hydrogen bonds: K:F.65 Salt bridges: K:K.276 pi-Cation interactions: K:K.276 Metal complexes: K:H.390 BCL.85: 16 residues within 4Å: Chain K: L.431, A.434, T.435, L.437, S.438, P.467, L.468, F.471, D.482, W.483, A.486, H.487, T.490 Chain L: M.20, L.23, V.27 14 PLIP interactions: 11 interactions with chain K, 3 interactions with chain L, Hydrophobic interactions: K:T.435, K:L.437, K:L.468, K:F.471, K:F.471, K:W.483, K:T.490, L:L.23, L:V.27, L:V.27 Hydrogen bonds: K:L.468 Salt bridges: K:H.487 pi-Stacking: K:W.483 Metal complexes: K:H.487 BCL.86: 17 residues within 4Å: Chain A: I.453, F.454 Chain C: L.96 Chain K: D.110, N.111, W.112, F.113, L.320, Y.321, G.322, H.612, I.616, I.619, M.687, F.690 Ligands: CLA.2, BCL.82 14 PLIP interactions: 10 interactions with chain K, 1 interactions with chain C, 3 interactions with chain A, Hydrophobic interactions: K:F.113, K:Y.321, K:I.616, K:I.616, K:I.619, K:F.690, C:L.96, A:I.453, A:F.454, A:F.454 Hydrogen bonds: K:W.112, K:Y.321 Salt bridges: K:H.612 Metal complexes: K:H.612

2 x F39: [(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate(Non-covalent)

F39.16: 22 residues within 4Å: Chain A: F.236, Q.237, Y.288, A.292, L.293, C.295, I.296, A.297, A.300, F.301, Q.303, S.305, F.306, I.372, H.376, V.501, A.504, F.505 Ligands: BCL.5, BCL.9, BCL.12, LHG.18 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.288, A:Y.288, A:A.300, A:F.301, A:F.306, A:I.372, A:V.501, A:A.504, A:F.505 Hydrogen bonds: A:F.236, A:Q.237, A:S.305 F39.87: 15 residues within 4Å: Chain K: F.236, Q.237, Y.288, A.292, C.295, I.296, A.300, S.305, F.306, H.376, W.411 Ligands: BCL.76, BCL.80, BCL.83, LHG.89 10 PLIP interactions: 10 interactions with chain K Hydrophobic interactions: K:Y.288, K:A.292, K:I.296, K:A.300, K:F.306, K:W.411, K:W.411 Hydrogen bonds: K:F.236, K:Q.237, K:S.305

4 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)

LHG.17: 16 residues within 4Å: Chain A: V.630, R.638, Q.645, T.648, I.649, L.652, F.665, P.666, V.667, L.668, A.676, F.679, L.680 Chain K: A.430 Chain L: L.66 Ligands: CLA.3 13 PLIP interactions: 11 interactions with chain A, 1 interactions with chain L, 1 interactions with chain K Hydrophobic interactions: A:Q.645, A:T.648, A:I.649, A:L.652, A:F.665, A:F.665, A:F.679, A:L.680, L:L.66, K:A.430 Hydrogen bonds: A:Q.645, A:L.668 Salt bridges: A:R.638 LHG.18: 14 residues within 4Å: Chain A: Y.288, C.295, F.298, V.299, Q.302, F.385, W.473, M.474, F.475, A.476, S.493 Ligands: BCL.5, F39.16, IKV.19 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.288, A:F.385, A:W.473 Hydrogen bonds: A:Q.302 LHG.88: 13 residues within 4Å: Chain A: A.430, F.433 Chain K: V.630, R.638, Q.645, F.665, P.666, V.667, L.668, A.676, F.679, L.680 Ligands: CLA.74 9 PLIP interactions: 7 interactions with chain K, 2 interactions with chain A Hydrophobic interactions: K:V.630, K:A.676, K:F.679, K:L.680, A:F.433, A:F.433 Hydrogen bonds: K:Q.645, K:L.668 Salt bridges: K:R.638 LHG.89: 14 residues within 4Å: Chain K: Y.288, C.295, V.299, Q.302, F.385, W.473, M.474, S.493, S.496, L.497, L.500 Ligands: BCL.76, F39.87, IKV.90 6 PLIP interactions: 6 interactions with chain K Hydrophobic interactions: K:Y.288, K:F.385, K:W.473, K:L.497, K:L.500 Hydrogen bonds: K:Q.302

2 x IKV: [(2~{R})-2-hexadecanoyloxy-3-[(2~{S},3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-propyl] hexadecanoate(Non-covalent)

IKV.19: 20 residues within 4Å: Chain A: C.295, F.298, I.377, V.381, F.385, M.474, F.475, A.476, D.482, A.486, I.489, G.492, S.493, G.551, G.554, L.555, Y.561, Y.592, Q.699 Ligands: LHG.18 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.298, A:I.377, A:V.381, A:V.381, A:F.385, A:F.475, A:A.486, A:I.489, A:L.555 Hydrogen bonds: A:A.476, A:A.476, A:Y.561, A:Q.699 IKV.90: 22 residues within 4Å: Chain K: C.295, F.298, R.366, I.377, V.381, M.474, F.475, A.476, D.477, D.482, A.486, I.489, G.492, S.493, G.551, G.554, L.555, V.558, Y.561, Y.592, Q.699 Ligands: LHG.89 13 PLIP interactions: 13 interactions with chain K Hydrophobic interactions: K:F.298, K:F.298, K:I.377, K:I.377, K:V.381, K:A.486, K:I.489, K:L.555 Hydrogen bonds: K:A.476, K:D.477, K:Y.561, K:Y.561, K:Q.699

2 x CA: CALCIUM ION(Non-covalent)

CA.20: 5 residues within 4Å: Chain A: D.563, E.603, F.692, N.695, G.696 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.563, A:E.603, A:E.603, A:F.692, A:G.696 CA.91: 5 residues within 4Å: Chain K: D.563, E.603, F.692, N.695, G.696 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:D.563, K:D.563, K:E.603, K:F.692, K:G.696

3 x SF4: IRON/SULFUR CLUSTER(Covalent)(Non-covalent)

SF4.21: 9 residues within 4Å: Chain A: C.527, G.529, C.536, E.633 Chain K: C.527, G.529, C.536, E.633, I.670 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain K, Salt bridges: A:E.633, K:E.633 Metal complexes: A:C.527, A:C.536, A:C.536, K:C.527, K:C.536, K:C.536 SF4.22: 11 residues within 4Å: Chain B: Y.133, C.150, A.156, I.174, C.179, I.180, S.181, C.182, S.183, A.184, C.185 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.150, B:C.179, B:C.182, B:C.185 SF4.23: 13 residues within 4Å: Chain B: I.135, C.140, V.141, G.142, C.143, G.144, C.146, C.172, C.191, P.192, S.193, A.195, L.196 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.140, B:C.143, B:C.146, B:C.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, H. et al., Cryo-EM structure of the whole photosynthetic reaction center apparatus from the green sulfur bacterium Chlorobaculum tepidum. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-02-08

Peptides

Photosystem P840 reaction center, large subunit: AK
Photosystem P840 reaction center iron-sulfur protein: B
Cytochrome c: CL
P840 reaction center 17 kDa protein: D
Bacteriochlorophyll a protein: EFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

K
a

B
B

C
C

L
c

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Membrane

We predict this structure to be a membrane protein.
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Photosystem P840 reaction center, large subunit

Photosystem P840 reaction center iron-sulfur protein

Cytochrome c

P840 reaction center 17 kDa protein

Bacteriochlorophyll a protein

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