SMTL ID : 8gwa.1

Structure of the intact photosynthetic light-harvesting antenna-reaction center complex from a green sulfur bacterium

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-1-1-2-1-1-2-mer

Ligands

73 x BCL: BACTERIOCHLOROPHYLL A(Covalent)(Non-covalent)

BCL.1: 24 residues within 4Å: Chain A: V.104, V.106, F.109, H.111, F.113, M.150, V.152, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, I.203, V.205, S.221, W.223 Chain C: S.127, V.130 Ligands: BCL.5, BCL.17, BCL.25 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain C, Hydrophobic interactions: A:F.109, A:F.113, A:L.159, A:T.162, A:W.163, A:T.166, A:F.183, A:W.184, A:I.203, A:V.205, A:W.223, A:W.223, A:W.223, C:V.130 Hydrogen bonds: A:S.221 Metal complexes: A:H.111 BCL.2: 23 residues within 4Å: Chain A: A.12, S.14, Y.16, A.34, V.36, P.39, P.40, A.41, A.189, F.258, S.260, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.3, BCL.4, BCL.5, BCL.6, BCL.17 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:A.12, A:A.34, A:V.36, A:A.189, A:F.258, A:F.258, A:V.267, A:N.305, A:F.307, A:F.307 Hydrogen bonds: A:S.14, A:A.41 pi-Stacking: A:F.307 Metal complexes: A:H.298 BCL.3: 26 residues within 4Å: Chain A: Y.16, I.18, V.30, A.32, C.49, V.51, G.257, F.258, V.269, L.288, H.290, P.291, P.294, H.298, L.313, Y.345, W.348, V.349, V.352, C.353, F.360, I.362 Ligands: BCL.2, BCL.4, BCL.5, BCL.6 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:Y.16, A:Y.16, A:I.18, A:V.30, A:A.32, A:V.51, A:F.258, A:V.269, A:L.288, A:P.291, A:P.294, A:P.294, A:H.298, A:W.348, A:V.349, A:V.352 Hydrogen bonds: A:Y.345, A:Y.345 Metal complexes: A:H.290 BCL.4: 25 residues within 4Å: Chain A: V.51, L.53, V.55, V.65, I.67, F.71, I.88, D.234, S.235, R.238, E.241, L.242, F.243, P.244, L.248, V.254, A.256, F.273, P.274, L.288, P.291 Ligands: BCL.2, BCL.3, BCL.5, BCL.6 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:V.51, A:L.53, A:V.55, A:I.67, A:F.71, A:F.71, A:I.88, A:L.242, A:L.242, A:L.242, A:L.248, A:F.273, A:F.273, A:P.274, A:L.288 Hydrogen bonds: A:D.234 Salt bridges: A:R.238 BCL.5: 31 residues within 4Å: Chain A: L.53, V.55, I.67, A.69, F.71, I.84, A.86, I.88, R.96, I.97, S.98, F.115, G.117, V.119, Q.144, H.146, I.148, W.184, F.225, H.227, S.235, L.242, A.252, V.254, F.273 Ligands: BCL.1, BCL.2, BCL.3, BCL.4, BCL.6, BCL.17 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:I.67, A:F.71, A:I.84, A:F.115, A:V.119, A:I.148, A:I.148, A:W.184, A:F.225, A:L.242, A:A.252, A:V.254, A:F.273 Hydrogen bonds: A:R.96 pi-Stacking: A:F.225 Metal complexes: A:H.146 BCL.6: 21 residues within 4Å: Chain A: A.41, S.42, L.82, F.185, I.186, P.188, A.189, A.192, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Chain C: Y.139 Ligands: BCL.2, BCL.3, BCL.4, BCL.5, BCL.17 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain C, Hydrophobic interactions: A:L.82, A:F.185, A:F.185, A:P.188, A:A.189, A:P.294, A:V.301, C:Y.139 Hydrogen bonds: A:Q.198 Metal complexes: A:H.297 BCL.7: 19 residues within 4Å: Chain A: L.122, F.123, Y.124, Y.125, R.126, S.127, R.143, F.145 Chain B: T.162, T.166, K.168, A.169, S.172, T.173, F.176, W.179, I.180, F.183 Ligands: BCL.10 15 PLIP interactions: 4 interactions with chain A, 11 interactions with chain B, Hydrophobic interactions: A:L.122, A:Y.124, A:Y.124, B:T.162, B:T.166, B:A.169, B:F.176, B:F.176, B:F.176, B:I.180, B:F.183 Metal complexes: A:Y.124 Hydrogen bonds: B:S.172, B:T.173 Salt bridges: B:K.168 BCL.8: 29 residues within 4Å: Chain A: Y.125, V.130, V.134, P.137, I.138, Y.139, Q.141 Chain B: P.43, L.44, D.48, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.104, V.106, F.113, F.115, M.150, F.183, W.184, I.186 Ligands: BCL.10, BCL.11, BCL.14, BCL.15 21 PLIP interactions: 4 interactions with chain A, 17 interactions with chain B, Hydrophobic interactions: A:V.134, B:P.43, B:L.44, B:F.71, B:N.80, B:L.82, B:L.82, B:I.84, B:V.104, B:V.106, B:V.106, B:F.113, B:F.113, B:F.115, B:F.115, B:M.150, B:I.186 Hydrogen bonds: A:I.138, A:Y.139, A:Q.141, B:S.73 BCL.10: 26 residues within 4Å: Chain A: S.127, V.130 Chain B: V.104, V.106, F.109, H.111, F.113, M.150, V.152, L.154, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, I.203, L.208, G.219, S.221, W.223 Ligands: BCL.7, BCL.8, BCL.14 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:F.113, B:L.154, B:L.159, B:T.162, B:W.163, B:T.166, B:I.180, B:I.180, B:I.203, B:L.208, B:W.223, B:W.223 pi-Stacking: B:H.111 Metal complexes: B:H.111 BCL.11: 26 residues within 4Å: Chain A: H.351 Chain B: A.12, S.14, Y.16, A.34, V.36, P.39, P.40, A.41, S.42, I.186, F.258, S.260, I.265, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.8, BCL.12, BCL.13, BCL.14, BCL.15 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:A.12, B:A.34, B:V.36, B:I.186, B:F.258, B:F.258, B:I.265, B:V.267, B:V.301, B:F.307, B:F.307 Hydrogen bonds: B:Y.16, B:A.41 Metal complexes: B:H.298 BCL.12: 29 residues within 4Å: Chain B: Y.16, I.18, V.30, A.32, C.49, V.51, F.71, G.257, F.258, V.269, I.287, L.288, H.290, P.291, P.294, L.295, H.298, L.313, Y.345, W.348, V.349, V.352, C.353, F.360, I.362 Ligands: BCL.11, BCL.13, BCL.14, BCL.15 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:Y.16, B:Y.16, B:I.18, B:V.30, B:A.32, B:F.71, B:F.258, B:V.269, B:L.288, B:P.291, B:P.294, B:L.295, B:H.298, B:W.348, B:V.349 Hydrogen bonds: B:Y.345, B:Y.345 Metal complexes: B:H.290 BCL.13: 24 residues within 4Å: Chain B: V.51, L.53, V.55, V.65, I.67, F.71, I.88, D.234, R.238, E.241, L.242, F.243, P.244, L.248, V.254, A.256, F.273, P.274, L.288, P.291 Ligands: BCL.11, BCL.12, BCL.14, BCL.15 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:V.51, B:L.53, B:V.55, B:F.71, B:F.71, B:I.88, B:L.242, B:L.242, B:L.248, B:V.254, B:F.273, B:P.274, B:L.288 Salt bridges: B:R.238 BCL.14: 30 residues within 4Å: Chain B: L.53, V.55, I.67, A.69, F.71, I.84, I.88, R.96, I.97, S.98, F.115, G.117, V.119, Q.144, H.146, I.148, W.184, H.227, S.235, W.239, L.242, A.252, V.254, F.273 Ligands: BCL.8, BCL.10, BCL.11, BCL.12, BCL.13, BCL.15 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:I.67, B:A.69, B:F.71, B:I.84, B:F.115, B:W.184, B:W.239, B:L.242, B:A.252, B:V.254, B:F.273 Hydrogen bonds: B:R.96 Metal complexes: B:H.146, B:H.146 BCL.15: 20 residues within 4Å: Chain B: A.41, S.42, L.82, F.185, I.186, P.188, A.189, A.192, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Ligands: BCL.8, BCL.11, BCL.12, BCL.13, BCL.14 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:F.185, B:F.185, B:P.188, B:P.188, B:P.294, B:P.294 Hydrogen bonds: B:Q.198 Metal complexes: B:H.297 BCL.16: 30 residues within 4Å: Chain B: Y.125, V.130, V.134, P.137, I.138, Y.139, Q.141 Chain C: S.42, P.43, L.44, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.104, V.106, F.113, F.115, M.150, F.183, W.184, I.186 Ligands: BCL.19, BCL.20, BCL.21, BCL.23, BCL.24 26 PLIP interactions: 20 interactions with chain C, 6 interactions with chain B, Hydrophobic interactions: C:P.43, C:L.44, C:F.71, C:V.75, C:N.80, C:L.82, C:L.82, C:I.84, C:V.104, C:V.106, C:V.106, C:F.113, C:F.113, C:F.113, C:F.115, C:F.115, C:M.150, C:F.183, C:I.186, B:V.134, B:Y.139, B:Y.139 Hydrogen bonds: C:S.73, B:I.138, B:Y.139, B:Q.141 BCL.17: 29 residues within 4Å: Chain A: S.42, P.43, L.44, A.47, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.104, V.106, F.113, F.115, F.183, W.184, I.186 Chain C: Y.125, V.130, V.134, P.137, I.138, Y.139, Q.141 Ligands: BCL.1, BCL.2, BCL.5, BCL.6 23 PLIP interactions: 5 interactions with chain C, 18 interactions with chain A, Hydrophobic interactions: C:V.134, A:P.43, A:L.44, A:A.47, A:F.71, A:V.75, A:N.80, A:L.82, A:L.82, A:I.84, A:V.104, A:V.106, A:F.113, A:F.113, A:F.115, A:F.115, A:F.183, A:I.186 Hydrogen bonds: C:Y.125, C:I.138, C:Y.139, C:Q.141, A:S.73 BCL.18: 20 residues within 4Å: Chain B: L.122, F.123, Y.124, Y.125, R.126, S.127, R.143, F.145 Chain C: D.161, T.162, T.166, K.168, A.169, S.172, T.173, F.176, W.179, I.180, F.183 Ligands: BCL.19 17 PLIP interactions: 12 interactions with chain C, 5 interactions with chain B, Hydrophobic interactions: C:T.162, C:T.166, C:K.168, C:A.169, C:F.176, C:F.176, C:I.180, C:F.183, B:L.122, B:Y.124, B:Y.124, B:R.126 Hydrogen bonds: C:S.172, C:T.173, C:T.173 Salt bridges: C:K.168 Metal complexes: B:Y.124 BCL.19: 25 residues within 4Å: Chain B: S.127, A.129, V.130 Chain C: V.104, V.106, F.109, H.111, F.113, M.150, V.152, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, V.205, G.219, S.221, W.223 Ligands: BCL.16, BCL.18, BCL.23 14 PLIP interactions: 13 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: C:F.113, C:T.162, C:W.163, C:T.166, C:I.180, C:I.180, C:F.183, C:W.184, C:V.205, C:W.223, C:W.223, B:V.130 pi-Stacking: C:H.111 Metal complexes: C:H.111 BCL.20: 27 residues within 4Å: Chain B: H.351 Chain C: A.12, S.14, Y.16, A.34, V.36, P.39, P.40, A.41, S.42, I.186, A.189, F.258, S.260, I.265, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.16, BCL.21, BCL.22, BCL.23, BCL.24 19 PLIP interactions: 19 interactions with chain C, Hydrophobic interactions: C:A.12, C:A.34, C:V.36, C:A.41, C:I.186, C:A.189, C:F.258, C:F.258, C:I.265, C:V.267, C:V.301, C:V.301, C:N.305, C:F.307, C:F.307 Hydrogen bonds: C:Y.16, C:A.41 pi-Stacking: C:F.307 Metal complexes: C:H.298 BCL.21: 30 residues within 4Å: Chain C: Y.16, I.18, V.30, A.32, C.49, V.51, F.71, A.256, G.257, F.258, V.269, I.287, L.288, H.290, P.291, P.294, L.295, H.298, L.313, Y.345, W.348, V.349, C.353, F.360, I.362 Ligands: BCL.16, BCL.20, BCL.22, BCL.23, BCL.24 18 PLIP interactions: 18 interactions with chain C, Hydrophobic interactions: C:Y.16, C:Y.16, C:I.18, C:V.30, C:A.32, C:F.71, C:A.256, C:F.258, C:F.258, C:L.288, C:P.291, C:L.295, C:H.298, C:W.348, C:W.348, C:V.349 Hydrogen bonds: C:Y.345 Metal complexes: C:H.290 BCL.22: 25 residues within 4Å: Chain C: V.51, L.53, V.55, V.65, I.67, F.71, I.88, D.234, R.238, E.241, L.242, F.243, P.244, L.248, V.254, A.256, V.269, F.273, P.274, L.288, P.291 Ligands: BCL.20, BCL.21, BCL.23, BCL.24 18 PLIP interactions: 18 interactions with chain C, Hydrophobic interactions: C:V.51, C:V.55, C:F.71, C:F.71, C:I.88, C:L.242, C:L.242, C:L.242, C:P.244, C:L.248, C:V.254, C:A.256, C:V.269, C:F.273, C:P.274, C:L.288 Salt bridges: C:R.238 Metal complexes: C:L.242 BCL.23: 31 residues within 4Å: Chain C: L.53, V.55, I.67, A.69, F.71, I.84, A.86, I.88, R.96, I.97, S.98, F.115, G.117, V.119, Q.144, H.146, I.148, W.184, F.225, H.227, S.235, W.239, L.242, V.254, F.273 Ligands: BCL.16, BCL.19, BCL.20, BCL.21, BCL.22, BCL.24 14 PLIP interactions: 14 interactions with chain C, Hydrophobic interactions: C:L.53, C:A.69, C:F.71, C:I.84, C:F.115, C:V.119, C:I.148, C:F.225, C:W.239, C:L.242, C:V.254, C:F.273 Hydrogen bonds: C:R.96 Metal complexes: C:H.146 BCL.24: 21 residues within 4Å: Chain B: Y.139 Chain C: A.41, S.42, L.82, F.185, I.186, P.188, A.189, A.192, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Ligands: BCL.16, BCL.20, BCL.21, BCL.22, BCL.23 12 PLIP interactions: 11 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: C:L.82, C:F.185, C:F.185, C:I.186, C:I.186, C:P.188, C:P.188, C:A.189, C:P.294, B:Y.139 Hydrogen bonds: C:Q.198 Metal complexes: C:H.297 BCL.25: 19 residues within 4Å: Chain A: D.161, T.162, T.166, K.168, A.169, S.172, T.173, F.176, W.179, I.180, F.183 Chain C: L.122, F.123, Y.124, Y.125, R.126, S.127, R.143 Ligands: BCL.1 13 PLIP interactions: 9 interactions with chain A, 4 interactions with chain C, Hydrophobic interactions: A:T.162, A:T.166, A:A.169, A:F.176, A:F.176, A:I.180, A:F.183, C:Y.124, C:Y.124, C:R.126 Hydrogen bonds: A:S.172 Salt bridges: A:K.168 Metal complexes: C:Y.124 BCL.30: 18 residues within 4Å: Chain F: F.65, T.67, L.70, V.75, G.78, H.79, L.82, W.165, D.274, A.278, F.279, H.282, I.286 Ligands: BCL.36, BCL.38, BCL.39, LHG.45, F26.102 9 PLIP interactions: 9 interactions with chain F, Hydrophobic interactions: F:T.67, F:V.75, F:L.82, F:W.165, F:F.279, F:F.279, F:H.282, F:I.286 Metal complexes: F:H.79 BCL.31: 24 residues within 4Å: Chain F: I.269, H.270, A.277, S.280, V.281, T.284, Y.288, V.388, G.391, G.392, Y.394, W.411, K.414, G.415, L.497, L.500, A.504, F.505 Chain L: A.22, M.26 Ligands: CDL.9, BCL.36, BCL.40, F39.41 17 PLIP interactions: 17 interactions with chain F, Hydrophobic interactions: F:V.281, F:V.281, F:Y.288, F:V.388, F:W.411, F:W.411, F:W.411, F:W.411, F:W.411, F:K.414, F:K.414, F:L.497, F:L.500, F:L.500 Hydrogen bonds: F:H.270, F:Y.288 Salt bridges: F:H.270 BCL.32: 28 residues within 4Å: Chain F: L.83, L.86, G.87, M.90, Y.94, I.117, R.120, M.121, L.124, I.126, W.146, F.149, H.150, V.153, L.157, M.213, L.216, F.217, W.220, V.223, F.253, I.289, L.293 Ligands: CDL.9, BCL.34, BCL.35, BCL.36, BCL.38 20 PLIP interactions: 20 interactions with chain F, Hydrophobic interactions: F:L.83, F:L.86, F:L.124, F:I.126, F:W.146, F:F.149, F:V.153, F:L.157, F:L.216, F:F.217, F:F.217, F:W.220, F:W.220, F:W.220, F:W.220, F:V.223, F:F.253, F:I.289, F:L.293 Salt bridges: F:R.120 BCL.33: 17 residues within 4Å: Chain F: L.80, V.156, L.157, F.159, G.160, R.163, H.164, N.168, L.169, T.170, N.171, P.172, F.180, F.183, R.184, Y.212 Ligands: BCL.34 11 PLIP interactions: 11 interactions with chain F, Hydrophobic interactions: F:L.80, F:L.80, F:V.156, F:L.157, F:L.169, F:L.169, F:F.180, F:F.183 Salt bridges: F:R.163, F:R.184 pi-Stacking: F:H.164 BCL.34: 26 residues within 4Å: Chain F: D.72, V.75, V.76, H.79, L.80, L.83, L.152, V.153, V.156, F.180, F.183, F.185, F.194, S.198, A.199, K.200, Y.202, A.205, P.208, H.209, Y.212, M.213, L.216 Ligands: BCL.32, BCL.33, F26.102 18 PLIP interactions: 18 interactions with chain F, Hydrophobic interactions: F:V.75, F:V.76, F:L.83, F:L.152, F:V.153, F:V.156, F:F.183, F:F.185, F:A.199, F:Y.202, F:Y.202, F:P.208, F:Y.212, F:L.216 Hydrogen bonds: F:V.75 Salt bridges: F:H.79 pi-Stacking: F:Y.212 Metal complexes: F:H.209 BCL.35: 18 residues within 4Å: Chain F: R.120, S.123, F.217, Q.237, T.238, I.239, S.241, E.242, M.245, S.246, S.305, F.306, Y.309, Y.310 Ligands: CDL.9, BCL.32, BCL.38, F39.41 10 PLIP interactions: 10 interactions with chain F, Hydrophobic interactions: F:R.120, F:I.239, F:E.242, F:F.306, F:F.306, F:Y.309, F:Y.310 Hydrogen bonds: F:S.123 pi-Cation interactions: F:R.120 Metal complexes: F:E.242 BCL.36: 19 residues within 4Å: Chain F: Y.202, K.203, A.205, L.206, G.207, H.209, M.213, P.265, A.267, H.270, A.278, H.282, A.285, I.286 Ligands: CDL.9, BCL.30, BCL.31, BCL.32, F26.102 13 PLIP interactions: 13 interactions with chain F, Hydrophobic interactions: F:Y.202, F:K.203, F:L.206, F:L.206, F:P.265, F:A.267, F:H.270, F:A.278, F:H.282, F:I.286 Hydrogen bonds: F:H.209, F:H.282 Metal complexes: F:H.282 BCL.37: 24 residues within 4Å: Chain F: Y.93, W.112, F.113, T.116, I.117, L.371, I.372, F.374, N.375, I.378, L.382, F.679, F.682, G.683, F.686, M.687, V.689, F.690, L.693 Ligands: BCL.38, BCL.39, LHG.45, LHG.46, BCL.101 11 PLIP interactions: 11 interactions with chain F, Hydrophobic interactions: F:F.113, F:T.116, F:L.371, F:F.374, F:L.382, F:F.679, F:F.686, F:V.689, F:F.690, F:L.693 Hydrogen bonds: F:Y.93 BCL.38: 20 residues within 4Å: Chain F: L.86, I.89, M.90, T.116, R.120, I.286, N.290, L.293, Y.310, I.372, N.375, H.376, C.379, Y.383 Ligands: BCL.30, BCL.32, BCL.35, BCL.37, F39.41, F26.102 7 PLIP interactions: 7 interactions with chain F, Hydrophobic interactions: F:L.86, F:L.86, F:I.89, F:I.286, F:N.290, F:Y.383 Metal complexes: F:H.376 BCL.39: 21 residues within 4Å: Chain F: Y.62, Q.63, F.65, D.66, T.67, K.276, F.279, Y.383, A.386, Y.389, H.390, Q.393, Y.523, Q.541, W.545, M.548, L.675, F.679 Ligands: BCL.30, BCL.37, LHG.45 16 PLIP interactions: 16 interactions with chain F, Hydrophobic interactions: F:Q.63, F:T.67, F:F.279, F:F.279, F:Y.383, F:Y.389, F:W.545, F:W.545, F:L.675, F:F.679 Hydrogen bonds: F:Q.63, F:I.64, F:F.65 Salt bridges: F:K.276 pi-Cation interactions: F:K.276 Metal complexes: F:H.390 BCL.40: 12 residues within 4Å: Chain A: H.13, K.35 Chain E: F.222, F.226, H.227 Chain F: I.410, K.414 Chain L: M.18, A.22, I.25 Ligands: CDL.9, BCL.31 11 PLIP interactions: 3 interactions with chain L, 5 interactions with chain E, 1 interactions with chain A, 2 interactions with chain F, Hydrophobic interactions: L:A.22, L:I.25, L:I.25, E:F.222, E:F.226, E:F.226, E:F.226, E:F.226, A:K.35, F:I.410, F:K.414 BCL.53: 17 residues within 4Å: Chain G: F.65, T.67, L.70, V.75, G.78, H.79, L.82, M.275, F.279, H.282, L.283, I.286 Chain M: F.78 Ligands: BCL.59, BCL.61, BCL.62, F26.64 12 PLIP interactions: 12 interactions with chain G, Hydrophobic interactions: G:T.67, G:L.70, G:V.75, G:L.82, G:F.279, G:F.279, G:H.282, G:L.283, G:I.286 Hydrogen bonds: G:G.78 pi-Cation interactions: G:H.79 Metal complexes: G:H.79 BCL.54: 23 residues within 4Å: Chain G: I.269, H.270, A.277, S.280, V.281, T.284, A.285, Y.288, V.388, G.391, G.392, Y.394, W.411, K.414, G.415, I.424, L.497, L.500, A.504, F.505 Ligands: BCL.59, F39.65, CDL.71 17 PLIP interactions: 17 interactions with chain G, Hydrophobic interactions: G:V.281, G:T.284, G:Y.288, G:Y.288, G:V.388, G:W.411, G:W.411, G:W.411, G:W.411, G:K.414, G:I.424, G:L.497, G:L.500, G:L.500 Hydrogen bonds: G:H.270 Salt bridges: G:H.270 pi-Stacking: G:W.411 BCL.55: 27 residues within 4Å: Chain G: L.83, L.86, G.87, M.90, Y.94, I.117, R.120, M.121, L.124, I.126, W.146, F.149, H.150, V.153, L.157, M.213, L.216, F.217, W.220, V.223, I.289, L.293 Ligands: BCL.57, BCL.58, BCL.59, BCL.61, CDL.71 19 PLIP interactions: 19 interactions with chain G, Hydrophobic interactions: G:L.86, G:L.124, G:I.126, G:W.146, G:W.146, G:F.149, G:F.149, G:V.153, G:L.157, G:L.216, G:F.217, G:W.220, G:W.220, G:W.220, G:V.223, G:I.289, G:L.293 Hydrogen bonds: G:Y.94 Salt bridges: G:R.120 BCL.56: 18 residues within 4Å: Chain G: L.80, V.156, L.157, F.159, G.160, R.163, H.164, N.168, L.169, T.170, N.171, P.172, R.176, G.178, F.180, F.183, Y.212 Ligands: BCL.57 11 PLIP interactions: 11 interactions with chain G, Hydrophobic interactions: G:L.80, G:L.80, G:L.157, G:L.169, G:L.169, G:F.180, G:F.183 Hydrogen bonds: G:N.171 Salt bridges: G:R.163, G:R.176 pi-Stacking: G:H.164 BCL.57: 23 residues within 4Å: Chain G: D.72, V.75, V.76, H.79, L.80, L.83, F.180, F.183, F.185, S.198, A.199, K.200, S.201, Y.202, A.205, P.208, H.209, Y.212, M.213, L.216 Ligands: BCL.55, BCL.56, F26.64 21 PLIP interactions: 21 interactions with chain G, Hydrophobic interactions: G:V.75, G:V.76, G:L.80, G:L.83, G:F.180, G:F.180, G:F.185, G:Y.202, G:A.205, G:P.208, G:Y.212, G:Y.212, G:L.216, G:L.216 Hydrogen bonds: G:V.75, G:H.79 Salt bridges: G:H.79 pi-Stacking: G:F.180, G:H.209, G:Y.212 Metal complexes: G:H.209 BCL.58: 19 residues within 4Å: Chain G: R.120, S.123, F.217, F.236, Q.237, T.238, I.239, S.241, E.242, M.245, S.246, F.249, S.305, F.306, Y.309, Y.310 Ligands: BCL.55, BCL.61, F39.65 10 PLIP interactions: 10 interactions with chain G, Hydrophobic interactions: G:R.120, G:F.236, G:I.239, G:E.242, G:F.306, G:Y.309, G:Y.310 Hydrogen bonds: G:S.123 pi-Cation interactions: G:R.120 Metal complexes: G:E.242 BCL.59: 21 residues within 4Å: Chain G: Y.202, K.203, A.205, L.206, G.207, H.209, M.213, P.265, A.267, H.270, L.271, A.278, V.281, H.282, A.285, I.286 Ligands: BCL.53, BCL.54, BCL.55, F26.64, CDL.71 15 PLIP interactions: 15 interactions with chain G, Hydrophobic interactions: G:Y.202, G:L.206, G:L.206, G:P.265, G:A.267, G:H.270, G:L.271, G:A.278, G:V.281, G:H.282, G:A.285, G:I.286 Hydrogen bonds: G:H.209 Salt bridges: G:H.282 Metal complexes: G:H.282 BCL.60: 23 residues within 4Å: Chain G: Y.93, W.112, F.113, T.116, I.117, L.371, I.372, F.374, N.375, I.378, L.382, F.679, F.682, G.683, F.686, M.687, V.689, F.690, L.693 Ligands: BCL.61, BCL.62, F26.64, BCL.99 12 PLIP interactions: 12 interactions with chain G, Hydrophobic interactions: G:F.113, G:T.116, G:L.371, G:F.374, G:I.378, G:I.378, G:F.679, G:F.682, G:F.682, G:V.689, G:F.690, G:L.693 BCL.61: 19 residues within 4Å: Chain G: L.86, M.90, T.116, R.120, I.286, N.290, L.293, Y.310, I.372, N.375, H.376, C.379, Y.383 Ligands: BCL.53, BCL.55, BCL.58, BCL.60, F26.64, F39.65 7 PLIP interactions: 7 interactions with chain G, Hydrophobic interactions: G:L.86, G:T.116, G:I.286, G:L.293, G:Y.383 pi-Stacking: G:H.376 Metal complexes: G:H.376 BCL.62: 20 residues within 4Å: Chain G: Y.62, Q.63, F.65, D.66, T.67, K.276, F.279, Y.383, A.386, Y.389, H.390, Q.393, Y.523, Q.541, W.545, M.548, F.679 Ligands: BCL.53, BCL.60, CDL.69 14 PLIP interactions: 14 interactions with chain G, Hydrophobic interactions: G:Q.63, G:T.67, G:F.279, G:Y.383, G:A.386, G:Y.389, G:W.545, G:W.545, G:F.679 Hydrogen bonds: G:Q.63, G:F.65 Salt bridges: G:K.276 pi-Cation interactions: G:K.276 Metal complexes: G:H.390 BCL.63: 15 residues within 4Å: Chain G: L.431, A.434, T.435, S.438, P.467, L.468, F.471, F.475, W.483, A.486, H.487, T.490 Chain N: M.20, L.23 Ligands: F39.42 13 PLIP interactions: 12 interactions with chain G, 1 interactions with chain N, Hydrophobic interactions: G:L.431, G:A.434, G:L.468, G:F.471, G:F.471, G:A.486, G:T.490, N:L.23 Hydrogen bonds: G:T.435, G:L.468 pi-Stacking: G:F.471, G:W.483 Metal complexes: G:H.487 BCL.73: 23 residues within 4Å: Chain H: V.104, V.106, F.109, H.111, F.113, M.150, V.152, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, I.203, L.208, G.219, S.221, W.223 Chain J: S.127, V.130 Ligands: BCL.74 15 PLIP interactions: 15 interactions with chain H, Hydrophobic interactions: H:V.104, H:F.113, H:L.159, H:T.162, H:W.163, H:T.166, H:I.180, H:I.180, H:F.183, H:F.183, H:I.203, H:L.208, H:W.223 pi-Stacking: H:H.111 Metal complexes: H:H.111 BCL.74: 29 residues within 4Å: Chain H: P.43, L.44, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.104, V.106, F.113, F.115, I.148, M.150, F.183, I.186 Chain J: Y.125, V.130, V.134, P.137, I.138, Y.139, Q.141 Ligands: BCL.73, BCL.75, BCL.76, BCL.78, BCL.79 22 PLIP interactions: 5 interactions with chain J, 17 interactions with chain H, Hydrophobic interactions: J:V.134, J:Y.139, H:L.44, H:V.75, H:N.80, H:L.82, H:L.82, H:V.104, H:V.106, H:V.106, H:F.113, H:F.113, H:F.113, H:F.115, H:F.115, H:I.148, H:M.150, H:F.183, H:I.186 Hydrogen bonds: J:I.138, J:Y.139, J:Q.141 BCL.75: 25 residues within 4Å: Chain H: A.12, S.14, Y.16, A.34, V.36, P.39, P.40, A.41, I.186, A.189, F.258, S.260, I.265, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.74, BCL.76, BCL.77, BCL.78, BCL.79 17 PLIP interactions: 17 interactions with chain H, Hydrophobic interactions: H:A.12, H:A.34, H:V.36, H:I.186, H:A.189, H:F.258, H:I.265, H:V.301, H:V.301, H:N.305, H:F.307, H:F.307 Hydrogen bonds: H:S.14, H:Y.16, H:A.41 pi-Stacking: H:F.307 Metal complexes: H:H.298 BCL.76: 28 residues within 4Å: Chain H: Y.16, I.18, V.30, A.32, V.51, A.256, G.257, F.258, V.269, L.288, H.290, P.291, P.294, L.295, H.298, L.313, Y.345, W.348, V.349, V.352, C.353, F.360, I.362 Ligands: BCL.74, BCL.75, BCL.77, BCL.78, BCL.79 19 PLIP interactions: 19 interactions with chain H, Hydrophobic interactions: H:Y.16, H:Y.16, H:I.18, H:V.30, H:A.32, H:A.256, H:F.258, H:F.258, H:V.269, H:L.288, H:P.291, H:P.294, H:L.295, H:H.298, H:W.348, H:W.348, H:V.349 Hydrogen bonds: H:Y.345 Metal complexes: H:H.290 BCL.77: 25 residues within 4Å: Chain H: V.51, L.53, V.55, I.67, F.71, I.88, D.234, S.235, R.238, E.241, L.242, F.243, P.244, L.248, V.254, A.256, V.269, F.273, P.274, L.288, P.291 Ligands: BCL.75, BCL.76, BCL.78, BCL.79 17 PLIP interactions: 17 interactions with chain H, Hydrophobic interactions: H:V.51, H:L.53, H:V.55, H:F.71, H:F.71, H:I.88, H:L.242, H:P.244, H:L.248, H:V.269, H:F.273, H:F.273, H:F.273, H:P.274, H:L.288, H:P.291 Salt bridges: H:R.238 BCL.78: 31 residues within 4Å: Chain H: L.53, V.55, I.67, A.69, F.71, I.84, A.86, I.88, R.96, I.97, S.98, F.115, G.117, S.118, V.119, Q.144, H.146, I.148, W.184, F.225, H.227, S.235, L.242, A.252, V.254, F.273 Ligands: BCL.74, BCL.75, BCL.76, BCL.77, BCL.79 14 PLIP interactions: 14 interactions with chain H, Hydrophobic interactions: H:L.53, H:I.67, H:A.69, H:F.71, H:I.84, H:F.115, H:W.184, H:L.242, H:A.252, H:V.254, H:F.273 Hydrogen bonds: H:R.96 pi-Stacking: H:F.225 Metal complexes: H:H.146 BCL.79: 20 residues within 4Å: Chain H: A.41, S.42, L.82, F.185, I.186, P.188, A.189, A.192, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Ligands: BCL.74, BCL.75, BCL.76, BCL.77, BCL.78 9 PLIP interactions: 9 interactions with chain H, Hydrophobic interactions: H:L.82, H:F.185, H:F.185, H:I.186, H:P.188, H:P.188, H:A.189 Hydrogen bonds: H:Q.198 Metal complexes: H:H.297 BCL.80: 18 residues within 4Å: Chain H: L.122, F.123, Y.124, Y.125, R.126, S.127, R.143 Chain I: T.162, T.166, K.168, A.169, S.172, T.173, F.176, W.179, I.180, F.183 Ligands: BCL.83 12 PLIP interactions: 4 interactions with chain H, 8 interactions with chain I, Hydrophobic interactions: H:Y.124, H:Y.124, H:R.126, I:T.166, I:F.176, I:F.176, I:I.180, I:F.183, I:F.183 Metal complexes: H:Y.124 Hydrogen bonds: I:S.172 Salt bridges: I:K.168 BCL.81: 31 residues within 4Å: Chain H: Y.125, V.130, V.134, P.137, I.138, Y.139, M.140, Q.141 Chain I: P.43, L.44, C.49, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.106, F.113, F.115, I.148, M.150, F.183, W.184, I.186, F.258 Ligands: BCL.83, BCL.84, BCL.87, BCL.88 19 PLIP interactions: 16 interactions with chain I, 3 interactions with chain H, Hydrophobic interactions: I:L.44, I:N.80, I:L.82, I:L.82, I:I.84, I:V.106, I:V.106, I:F.113, I:F.113, I:F.115, I:F.115, I:I.148, I:M.150, I:F.183, I:F.258, H:V.134 Hydrogen bonds: I:S.73, H:I.138, H:Y.139 BCL.82: 19 residues within 4Å: Chain H: D.161, T.162, T.166, K.168, A.169, S.172, T.173, F.176, W.179, I.180, F.183 Chain J: L.122, F.123, Y.124, Y.125, R.126, S.127, R.143, F.145 15 PLIP interactions: 9 interactions with chain H, 6 interactions with chain J, Hydrophobic interactions: H:T.162, H:T.166, H:A.169, H:F.176, H:F.176, H:F.176, H:F.183, J:L.122, J:Y.124, J:Y.124, J:R.126 Hydrogen bonds: H:S.172, H:T.173, J:R.126 Metal complexes: J:Y.124 BCL.83: 27 residues within 4Å: Chain H: Y.125, S.127, A.129, V.130 Chain I: V.104, V.106, F.109, H.111, F.113, M.150, V.152, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, I.203, V.205, L.208, G.219, S.221, W.223 Ligands: BCL.80, BCL.81 20 PLIP interactions: 19 interactions with chain I, 1 interactions with chain H, Hydrophobic interactions: I:V.104, I:V.104, I:F.113, I:L.159, I:T.162, I:W.163, I:T.166, I:I.180, I:I.180, I:F.183, I:I.203, I:V.205, I:L.208, I:W.223, I:W.223, I:W.223, I:W.223, H:Y.125 pi-Stacking: I:H.111 Metal complexes: I:H.111 BCL.84: 28 residues within 4Å: Chain H: H.351 Chain I: A.12, S.14, Y.16, A.34, V.36, A.38, P.39, P.40, A.41, S.42, I.186, A.189, F.258, S.260, I.265, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.81, BCL.85, BCL.86, BCL.87, BCL.88 16 PLIP interactions: 16 interactions with chain I, Hydrophobic interactions: I:A.12, I:A.34, I:V.36, I:A.38, I:I.186, I:A.189, I:F.258, I:F.258, I:I.265, I:V.267, I:V.301, I:N.305, I:F.307, I:F.307 Hydrogen bonds: I:A.41 Metal complexes: I:H.298 BCL.85: 27 residues within 4Å: Chain I: Y.16, I.18, V.30, A.32, C.49, V.51, G.257, F.258, V.269, L.288, H.290, P.291, P.294, L.295, H.298, L.313, Y.345, W.348, V.349, V.352, C.353, F.360, I.362 Ligands: BCL.84, BCL.86, BCL.87, BCL.88 20 PLIP interactions: 20 interactions with chain I, Hydrophobic interactions: I:Y.16, I:Y.16, I:I.18, I:V.30, I:A.32, I:F.258, I:F.258, I:V.269, I:L.288, I:P.291, I:P.294, I:L.295, I:H.298, I:L.313, I:W.348, I:V.349 Hydrogen bonds: I:Y.345, I:Y.345 pi-Stacking: I:H.290 Metal complexes: I:H.290 BCL.86: 22 residues within 4Å: Chain I: V.51, L.53, V.55, F.71, I.88, D.234, R.238, E.241, L.242, F.243, P.244, L.248, V.254, A.256, F.273, P.274, L.288, P.291 Ligands: BCL.84, BCL.85, BCL.87, BCL.88 12 PLIP interactions: 12 interactions with chain I, Hydrophobic interactions: I:V.51, I:V.55, I:F.71, I:F.71, I:I.88, I:L.242, I:L.242, I:L.248, I:P.274, I:L.288 Salt bridges: I:R.238 Metal complexes: I:L.242 BCL.87: 28 residues within 4Å: Chain I: L.53, V.55, I.67, A.69, I.84, A.86, I.88, R.96, I.97, S.98, F.115, G.117, V.119, Q.144, H.146, I.148, W.184, H.227, S.235, W.239, L.242, A.252, V.254 Ligands: BCL.81, BCL.84, BCL.85, BCL.86, BCL.88 13 PLIP interactions: 13 interactions with chain I, Hydrophobic interactions: I:L.53, I:L.53, I:I.67, I:I.67, I:I.84, I:V.119, I:W.184, I:W.239, I:L.242, I:V.254 Hydrogen bonds: I:R.96 Salt bridges: I:R.96 Metal complexes: I:H.146 BCL.88: 21 residues within 4Å: Chain H: Y.139 Chain I: A.41, S.42, L.82, F.185, I.186, P.188, A.189, A.192, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Ligands: BCL.81, BCL.84, BCL.85, BCL.86, BCL.87 8 PLIP interactions: 1 interactions with chain H, 7 interactions with chain I, Hydrophobic interactions: H:Y.139, I:L.82, I:F.185, I:F.185, I:P.188, I:A.189, I:P.294 Metal complexes: I:H.297 BCL.89: 19 residues within 4Å: Chain I: L.122, F.123, Y.124, Y.125, R.126, S.127, R.143 Chain J: D.161, T.162, T.166, K.168, A.169, S.172, T.173, F.176, W.179, I.180, F.183 Ligands: BCL.91 12 PLIP interactions: 9 interactions with chain J, 3 interactions with chain I, Hydrophobic interactions: J:T.166, J:A.169, J:F.176, J:F.176, J:F.176, J:I.180, J:F.183, I:Y.124, I:Y.124 Hydrogen bonds: J:S.172 Salt bridges: J:K.168 Metal complexes: I:Y.124 BCL.90: 29 residues within 4Å: Chain I: Y.125, V.130, V.134, P.137, I.138, Y.139, Q.141 Chain J: P.43, L.44, A.47, F.71, S.73, V.75, N.80, K.81, L.82, I.84, V.106, F.113, F.115, F.183, W.184, I.186, F.258 Ligands: BCL.91, BCL.92, BCL.93, BCL.95, BCL.96 19 PLIP interactions: 15 interactions with chain J, 4 interactions with chain I, Hydrophobic interactions: J:P.43, J:L.44, J:A.47, J:F.71, J:N.80, J:L.82, J:L.82, J:I.84, J:V.106, J:V.106, J:F.113, J:F.115, J:F.115, J:I.186, J:F.258, I:V.134 Hydrogen bonds: I:I.138, I:Y.139, I:Q.141 BCL.91: 27 residues within 4Å: Chain I: S.127, V.130 Chain J: V.104, V.106, F.109, H.111, F.113, M.150, V.152, D.158, L.159, T.162, W.163, T.166, I.180, F.183, W.184, I.203, V.205, L.208, G.219, S.221, W.223 Ligands: BCL.89, BCL.90, BCL.95, BCL.96 20 PLIP interactions: 20 interactions with chain J, Hydrophobic interactions: J:V.104, J:V.104, J:F.109, J:F.113, J:T.162, J:W.163, J:T.166, J:I.180, J:I.180, J:F.183, J:W.184, J:I.203, J:V.205, J:L.208, J:L.208, J:W.223, J:W.223, J:W.223 pi-Stacking: J:H.111 Metal complexes: J:H.111 BCL.92: 27 residues within 4Å: Chain I: H.351 Chain J: A.12, S.14, Y.16, A.34, V.36, P.39, P.40, A.41, S.42, I.186, A.189, F.258, S.260, I.265, V.267, H.298, V.301, G.302, N.305, F.307, C.353 Ligands: BCL.90, BCL.93, BCL.94, BCL.95, BCL.96 16 PLIP interactions: 16 interactions with chain J, Hydrophobic interactions: J:A.12, J:A.34, J:V.36, J:I.186, J:A.189, J:F.258, J:F.258, J:I.265, J:V.267, J:V.301, J:N.305, J:F.307, J:F.307 Hydrogen bonds: J:Y.16, J:A.41 Metal complexes: J:H.298 BCL.93: 29 residues within 4Å: Chain J: Y.16, I.18, V.30, A.32, V.51, A.256, G.257, F.258, V.269, I.287, L.288, H.290, P.291, P.294, L.295, H.298, L.313, Y.345, W.348, V.349, V.352, C.353, F.360, I.362 Ligands: BCL.90, BCL.92, BCL.94, BCL.95, BCL.96 18 PLIP interactions: 18 interactions with chain J, Hydrophobic interactions: J:Y.16, J:Y.16, J:I.18, J:V.30, J:A.32, J:A.256, J:F.258, J:V.269, J:L.288, J:P.291, J:P.294, J:L.295, J:H.298, J:W.348, J:V.349 Hydrogen bonds: J:Y.345, J:Y.345 Metal complexes: J:H.290 BCL.94: 24 residues within 4Å: Chain J: V.51, L.53, V.55, V.65, I.67, F.71, I.88, D.234, R.238, E.241, L.242, F.243, P.244, L.248, V.254, A.256, F.273, P.274, L.288, P.291 Ligands: BCL.92, BCL.93, BCL.95, BCL.96 16 PLIP interactions: 16 interactions with chain J, Hydrophobic interactions: J:V.51, J:L.53, J:V.55, J:I.67, J:F.71, J:F.71, J:I.88, J:L.242, J:L.242, J:L.248, J:A.256, J:F.273, J:P.274, J:L.288 Salt bridges: J:R.238 Metal complexes: J:L.242 BCL.95: 33 residues within 4Å: Chain J: L.53, V.55, I.67, A.69, F.71, I.84, A.86, I.88, R.96, I.97, S.98, F.115, G.117, S.118, V.119, Q.144, H.146, I.148, W.184, F.225, H.227, S.235, W.239, L.242, A.252, V.254, F.273 Ligands: BCL.90, BCL.91, BCL.92, BCL.93, BCL.94, BCL.96 15 PLIP interactions: 15 interactions with chain J, Hydrophobic interactions: J:L.53, J:V.55, J:I.67, J:F.71, J:F.115, J:V.119, J:I.148, J:I.148, J:F.225, J:W.239, J:L.242, J:A.252, J:F.273 Hydrogen bonds: J:R.96 Metal complexes: J:H.146 BCL.96: 23 residues within 4Å: Chain I: Y.139 Chain J: A.41, S.42, L.82, F.185, I.186, P.188, A.189, A.192, L.193, Q.198, I.293, P.294, H.297, H.298, M.300, V.301 Ligands: BCL.90, BCL.91, BCL.92, BCL.93, BCL.94, BCL.95 13 PLIP interactions: 12 interactions with chain J, 1 interactions with chain I, Hydrophobic interactions: J:L.82, J:F.185, J:F.185, J:P.188, J:A.189, J:A.192, J:L.193, J:I.293, J:P.294, J:H.297, I:Y.139 Hydrogen bonds: J:Q.198 Metal complexes: J:H.297 BCL.98: 18 residues within 4Å: Chain F: L.431, A.434, T.435, S.438, P.467, L.468, F.471, F.475, W.483, A.486, H.487, T.490 Chain L: L.33, W.34, G.35 Chain M: L.23, F.24 Ligands: F39.100 8 PLIP interactions: 1 interactions with chain L, 5 interactions with chain F, 2 interactions with chain M, Hydrophobic interactions: L:W.34, F:A.434, F:L.468, M:L.23, M:F.24 Hydrogen bonds: F:L.468 pi-Stacking: F:W.483 Metal complexes: F:H.487 BCL.99: 16 residues within 4Å: Chain F: I.453, F.454 Chain G: D.110, N.111, W.112, F.113, L.320, Y.321, G.322, H.612, I.616, I.619, M.687 Chain M: L.96 Ligands: G2O.49, BCL.60 14 PLIP interactions: 3 interactions with chain F, 10 interactions with chain G, 1 interactions with chain M, Hydrophobic interactions: F:I.453, F:F.454, F:F.454, G:F.113, G:I.616, G:I.619, M:L.96 Hydrogen bonds: G:W.112, G:F.113, G:Y.321 Salt bridges: G:H.612 pi-Stacking: G:H.612, G:H.612 Metal complexes: G:H.612 BCL.101: 16 residues within 4Å: Chain F: D.110, N.111, W.112, F.113, L.320, Y.321, G.322, H.612, I.616, I.619, M.687, F.690 Chain G: F.454 Chain N: L.96 Ligands: BCL.37, G2O.50 12 PLIP interactions: 9 interactions with chain F, 2 interactions with chain N, 1 interactions with chain G, Hydrophobic interactions: F:I.616, F:I.619, F:M.687, F:F.690, N:L.96, N:L.96, G:F.454 Hydrogen bonds: F:W.112, F:F.113, F:Y.321 Salt bridges: F:H.612 Metal complexes: F:H.612

4 x CDL: CARDIOLIPIN(Covalent)(Non-covalent)

CDL.9: 22 residues within 4Å: Chain A: T.11, H.13, K.35, N.37 Chain F: L.206, F.249, I.252, F.253, L.256, Y.259, W.260, P.265, N.266, A.267, S.409, I.410, W.411 Ligands: BCL.31, BCL.32, BCL.35, BCL.36, BCL.40 17 PLIP interactions: 14 interactions with chain F, 3 interactions with chain A Hydrophobic interactions: F:L.206, F:F.249, F:I.252, F:F.253, F:F.253, F:L.256, F:Y.259, F:W.260, F:W.260, F:P.265, F:W.411, F:W.411 Hydrogen bonds: F:N.266, F:I.410, A:N.37 Salt bridges: A:H.13, A:K.35 CDL.69: 22 residues within 4Å: Chain G: R.57, K.60, W.61, Y.62, I.626, P.666, L.668, D.672, L.675, F.679 Chain J: R.331, S.332, Q.333 Chain M: I.63, L.66, G.67, S.70, S.71 Ligands: G2O.52, BCL.62, LHG.70, F39.100 13 PLIP interactions: 7 interactions with chain G, 1 interactions with chain J, 5 interactions with chain M Hydrophobic interactions: G:W.61, G:Y.62, G:I.626, G:F.679, M:I.63, M:L.66, M:L.66 Hydrogen bonds: G:W.61, G:D.672, J:R.331, M:S.70, M:S.70 Salt bridges: G:R.57 CDL.71: 12 residues within 4Å: Chain G: Y.259, W.260, P.265, N.266, I.289, S.409, I.410, W.411 Ligands: BCL.54, BCL.55, BCL.59, F39.65 8 PLIP interactions: 8 interactions with chain G Hydrophobic interactions: G:Y.259, G:W.260, G:W.260, G:I.289, G:I.289, G:W.411 Hydrogen bonds: G:N.266, G:I.410 CDL.103: 18 residues within 4Å: Chain F: I.649, L.652, F.656, L.657, V.661, N.662, F.663, F.665 Chain G: F.433 Chain N: N.6, L.9, I.10, L.12, F.57, S.60, I.61, M.64 Ligands: F39.42 12 PLIP interactions: 7 interactions with chain F, 4 interactions with chain N, 1 interactions with chain G Hydrophobic interactions: F:L.652, F:F.656, F:F.656, F:L.657, N:F.57, N:F.57, N:I.61, G:F.433 Hydrogen bonds: F:N.662, F:N.662, F:F.663, N:N.6

3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.26: 12 residues within 4Å: Chain E: I.135, C.140, V.141, G.142, C.143, G.144, C.146, C.172, C.191, P.192, S.193, A.195 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.140, E:C.143, E:C.146, E:C.191 SF4.27: 15 residues within 4Å: Chain E: Y.133, K.149, C.150, P.151, V.154, A.156, I.157, I.174, C.179, I.180, S.181, C.182, S.183, A.184, C.185 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.150, E:C.179, E:C.182, E:C.185 SF4.48: 10 residues within 4Å: Chain F: C.527, G.529, C.536, E.633, I.670 Chain G: C.527, G.529, C.536, E.633, I.670 6 PLIP interactions: 3 interactions with chain F, 3 interactions with chain G, Salt bridges: F:E.633, G:E.633 Metal complexes: F:C.527, F:C.536, G:C.527, G:C.536

2 x GS0: Bacteriochlorophyll A isomer(Covalent)

GS0.28: 29 residues within 4Å: Chain F: M.436, Y.440, I.443, V.488, G.492, I.552, K.553, G.554, S.556, A.557, W.560, I.567, I.596, F.600, I.607, L.617, H.621, W.624, Y.681, T.685, L.688, V.689, F.692 Chain G: F.597, F.600, W.624 Ligands: G2O.49, G2O.50, GS0.51 25 PLIP interactions: 22 interactions with chain F, 3 interactions with chain G, Hydrophobic interactions: F:Y.440, F:I.443, F:K.553, F:A.557, F:W.560, F:W.560, F:W.560, F:I.567, F:I.596, F:I.596, F:F.600, F:I.607, F:L.617, F:W.624, F:W.624, F:F.692, F:F.692, G:F.597, G:F.600, G:F.600 Hydrogen bonds: F:Y.681 pi-Stacking: F:F.600, F:W.624, F:W.624 Metal complexes: F:H.621 GS0.51: 29 residues within 4Å: Chain F: F.597, F.600 Chain G: M.436, Y.440, I.443, V.488, G.492, K.553, G.554, S.556, A.557, W.560, I.567, I.596, F.600, I.607, F.608, L.617, H.621, W.624, Y.681, G.684, T.685, L.688, V.689, F.692 Ligands: GS0.28, G2O.49, G2O.50 23 PLIP interactions: 21 interactions with chain G, 2 interactions with chain F, Hydrophobic interactions: G:Y.440, G:I.443, G:V.488, G:K.553, G:W.560, G:W.560, G:W.560, G:I.567, G:I.596, G:I.607, G:F.608, G:L.617, G:W.624, G:W.624, G:F.692, G:F.692, F:F.600, F:F.600 Hydrogen bonds: G:T.685 pi-Stacking: G:F.600, G:W.624, G:W.624 Metal complexes: G:H.621

4 x G2O: Chlorophyll A ester(Non-covalent)(Covalent)

G2O.29: 25 residues within 4Å: Chain F: L.622, F.625, I.626, F.628, A.629, F.632, D.634, S.637, R.638, G.641, A.642, Q.645 Chain G: M.429, F.433, M.436, L.437, Y.440, I.498, R.502, F.546, L.549, W.550 Chain N: A.59 Ligands: LHG.46, G2O.50 19 PLIP interactions: 12 interactions with chain G, 1 interactions with chain N, 6 interactions with chain F, Hydrophobic interactions: G:F.433, G:M.436, G:L.437, G:Y.440, G:Y.440, G:F.546, G:L.549, N:A.59, F:L.622, F:F.625, F:I.626, F:A.629, F:F.632, F:D.634 Hydrogen bonds: G:R.502, G:R.502 pi-Stacking: G:W.550, G:W.550, G:W.550 G2O.49: 29 residues within 4Å: Chain F: M.436, L.437, Y.440, A.441, V.444, I.448, F.454, F.495, L.549, W.550, K.553, M.570, F.597, F.600, Y.681 Chain G: T.615, M.618, I.619, H.621, L.622, F.625, F.628 Chain M: L.55, I.56, A.59 Ligands: GS0.28, GS0.51, G2O.52, BCL.99 24 PLIP interactions: 10 interactions with chain G, 2 interactions with chain M, 12 interactions with chain F, Hydrophobic interactions: G:M.618, G:I.619, G:I.619, G:H.621, G:L.622, G:F.625, G:F.625, G:F.625, G:F.628, M:L.55, M:A.59, F:L.437, F:Y.440, F:Y.440, F:Y.440, F:A.441, F:I.448, F:F.454, F:F.495, F:L.549, F:F.597, F:Y.681 pi-Stacking: G:F.625 Salt bridges: F:K.553 G2O.50: 30 residues within 4Å: Chain F: T.615, M.618, I.619, H.621, L.622, W.624, F.625, F.628 Chain G: M.436, L.437, Y.440, A.441, V.444, I.448, F.495, L.549, W.550, K.553, M.570, F.597, F.600, W.624, Y.681 Chain N: L.55, I.56, A.59 Ligands: GS0.28, G2O.29, GS0.51, BCL.101 27 PLIP interactions: 10 interactions with chain F, 14 interactions with chain G, 3 interactions with chain N, Hydrophobic interactions: F:M.618, F:I.619, F:L.622, F:L.622, F:F.625, F:F.625, F:F.625, F:F.628, G:L.437, G:Y.440, G:Y.440, G:A.441, G:V.444, G:V.444, G:I.448, G:I.448, G:F.495, G:L.549, G:F.597, G:W.624, G:Y.681, N:L.55, N:I.56, N:A.59 pi-Stacking: F:F.625, F:F.625 Salt bridges: G:K.553 G2O.52: 28 residues within 4Å: Chain F: M.429, C.432, F.433, M.436, L.437, Y.440, F.495, I.498, R.502, F.546, L.549, W.550 Chain G: L.622, F.625, I.626, F.628, A.629, F.632, D.634, S.637, R.638, G.641, Q.645 Chain M: A.59, I.62 Ligands: G2O.49, CDL.69, LHG.70 23 PLIP interactions: 9 interactions with chain G, 13 interactions with chain F, 1 interactions with chain M, Hydrophobic interactions: G:L.622, G:F.625, G:F.625, G:I.626, G:A.629, G:F.632, G:D.634, G:R.638, F:F.433, F:F.433, F:M.436, F:L.437, F:Y.440, F:F.495, F:F.546, F:L.549, F:W.550, M:I.62 Hydrogen bonds: G:Q.645, F:R.502 pi-Stacking: F:W.550, F:W.550, F:W.550

4 x F39: [(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate(Covalent)(Non-covalent)

F39.41: 22 residues within 4Å: Chain F: F.236, Q.237, Y.288, I.291, A.292, L.293, I.296, V.299, A.300, Q.303, S.305, F.306, I.372, H.376, L.497, V.501, F.505 Chain L: M.26 Ligands: BCL.31, BCL.35, BCL.38, LHG.43 13 PLIP interactions: 13 interactions with chain F Hydrophobic interactions: F:I.291, F:A.292, F:A.292, F:L.293, F:I.296, F:V.299, F:F.306, F:F.306, F:I.372, F:L.497, F:V.501, F:F.505 Hydrogen bonds: F:S.305 F39.42: 19 residues within 4Å: Chain F: F.663, F.665, P.666 Chain G: F.433, A.434, L.437, L.468, F.471 Chain N: M.20, L.23, V.27, S.60, I.63, M.64, K.68 Ligands: LHG.45, LHG.46, BCL.63, CDL.103 13 PLIP interactions: 4 interactions with chain G, 2 interactions with chain F, 7 interactions with chain N Hydrophobic interactions: G:F.433, G:A.434, G:L.468, G:F.471, F:F.663, F:F.665, N:L.23, N:L.23, N:V.27, N:I.63, N:M.64 Hydrogen bonds: N:K.68, N:K.68 F39.65: 24 residues within 4Å: Chain G: F.236, Q.237, Y.288, A.292, L.293, C.295, I.296, A.297, V.299, A.300, Q.303, S.305, F.306, I.372, H.376, W.411, V.501, A.504, F.505 Ligands: BCL.54, BCL.58, BCL.61, LHG.66, CDL.71 24 PLIP interactions: 24 interactions with chain G Hydrophobic interactions: G:Y.288, G:Y.288, G:Y.288, G:Y.288, G:A.292, G:A.292, G:L.293, G:L.293, G:I.296, G:I.296, G:A.297, G:V.299, G:V.299, G:A.300, G:F.306, G:I.372, G:W.411, G:W.411, G:V.501, G:A.504, G:F.505 Hydrogen bonds: G:F.236, G:Q.237, G:S.305 F39.100: 20 residues within 4Å: Chain F: F.433, A.434, L.437, F.471 Chain G: F.663, F.665, P.666 Chain M: M.20, V.27, I.56, S.60, I.63, M.64, G.67, K.68 Ligands: LHG.68, CDL.69, LHG.70, LHG.97, BCL.98 10 PLIP interactions: 4 interactions with chain F, 3 interactions with chain G, 3 interactions with chain M Hydrophobic interactions: F:F.433, F:A.434, F:L.437, F:F.471, G:F.663, G:F.665, G:P.666, M:V.27, M:I.56, M:I.63

7 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)(Covalent)

LHG.43: 11 residues within 4Å: Chain F: Y.288, I.291, C.295, V.299, Q.303, W.473, M.474, A.476 Chain L: L.33 Ligands: F39.41, LMG.44 6 PLIP interactions: 4 interactions with chain F, 2 interactions with chain L Hydrophobic interactions: F:Y.288, F:I.291, F:W.473, L:L.33, L:L.33 Hydrogen bonds: F:Q.303 LHG.45: 17 residues within 4Å: Chain F: K.60, W.61, Y.62, P.666, L.668, D.672, L.675, A.676, F.679 Chain N: L.66, S.70, S.71 Ligands: BCL.30, BCL.37, BCL.39, F39.42, LHG.46 12 PLIP interactions: 11 interactions with chain F, 1 interactions with chain N Hydrophobic interactions: F:W.61, F:Y.62, F:P.666, F:L.668, F:L.668, F:L.675, F:L.675, F:A.676, F:F.679, F:F.679 Salt bridges: F:K.60 Hydrogen bonds: N:S.70 LHG.46: 23 residues within 4Å: Chain F: V.623, I.626, A.629, V.630, R.638, Q.645, T.648, I.649, F.665, P.666, V.667, L.668, A.676, F.679, L.680, F.682, G.683, G.684 Chain G: A.430 Ligands: G2O.29, BCL.37, F39.42, LHG.45 10 PLIP interactions: 9 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: F:T.648, F:I.649, F:F.665, F:F.679, F:L.680, F:L.680, G:A.430 Hydrogen bonds: F:P.666, F:L.668 Salt bridges: F:R.638 LHG.66: 10 residues within 4Å: Chain G: Y.288, C.295, V.299, W.473, M.474, F.475, A.476, S.493 Ligands: F39.65, LMG.67 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:Y.288, G:W.473, G:W.473 LHG.68: 17 residues within 4Å: Chain F: A.430, F.433 Chain G: I.649, L.652, L.657, N.658, R.659, D.660, V.661, N.662, F.663, F.665 Chain M: N.6, L.9 Ligands: LHG.70, LHG.97, F39.100 7 PLIP interactions: 4 interactions with chain G, 1 interactions with chain F, 2 interactions with chain M Hydrophobic interactions: G:I.649, G:L.657, F:F.433 Hydrogen bonds: G:N.658, G:F.663, M:N.6, M:N.6 LHG.70: 20 residues within 4Å: Chain F: M.429, A.430, F.433 Chain G: I.626, A.629, V.630, R.638, Q.645, T.648, I.649, F.665, P.666, V.667, L.668, A.676, L.680 Ligands: G2O.52, LHG.68, CDL.69, F39.100 12 PLIP interactions: 3 interactions with chain F, 9 interactions with chain G Hydrophobic interactions: F:A.430, F:F.433, F:F.433, G:T.648, G:F.665, G:F.665, G:A.676, G:L.680, G:L.680 Hydrogen bonds: G:Q.645, G:L.668 Salt bridges: G:R.638 LHG.97: 12 residues within 4Å: Chain K: X.6, X.7 Chain M: N.6, L.9, L.12, A.13, L.19, F.57, S.60, M.64 Ligands: LHG.68, F39.100 5 PLIP interactions: 5 interactions with chain M Hydrophobic interactions: M:L.9, M:L.12, M:A.13, M:L.19, M:F.57

2 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Covalent)

LMG.44: 21 residues within 4Å: Chain F: F.298, Q.302, R.366, I.377, V.381, M.474, F.475, A.476, D.482, M.485, A.486, I.489, T.490, S.493, G.554, L.555, V.558, Y.561 Chain L: L.33, W.34 Ligands: LHG.43 12 PLIP interactions: 11 interactions with chain F, 1 interactions with chain L Hydrophobic interactions: F:F.298, F:V.381, F:A.486, F:I.489, F:V.558, L:L.33 Hydrogen bonds: F:Q.302, F:Q.302, F:R.366, F:R.366, F:Y.561, F:Y.561 LMG.67: 15 residues within 4Å: Chain G: C.295, F.298, Q.302, R.366, I.377, M.474, F.475, A.476, A.486, I.489, S.493, G.554, V.558, Y.561 Ligands: LHG.66 9 PLIP interactions: 9 interactions with chain G Hydrophobic interactions: G:F.298, G:F.475, G:A.486, G:I.489, G:V.558 Hydrogen bonds: G:Q.302, G:Q.302, G:R.366, G:Y.561

2 x CA: CALCIUM ION(Non-covalent)

CA.47: 6 residues within 4Å: Chain F: D.563, E.603, F.692, L.693, N.695, G.696 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.563, F:D.563, F:E.603, F:F.692, F:G.696 CA.72: 6 residues within 4Å: Chain G: D.563, E.603, F.692, L.693, N.695, G.696 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.563, G:E.603, G:F.692, G:G.696

2 x F26: 2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E,19E)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene(Non-covalent)(Covalent)

F26.64: 14 residues within 4Å: Chain G: H.79, L.82, L.83, L.86, F.113, Y.202, H.209, M.213, H.282 Ligands: BCL.53, BCL.57, BCL.59, BCL.60, BCL.61 8 PLIP interactions: 8 interactions with chain G Hydrophobic interactions: G:H.79, G:L.82, G:L.83, G:L.83, G:L.86, G:F.113, G:Y.202, G:Y.202 F26.102: 15 residues within 4Å: Chain F: H.79, L.82, L.83, L.86, Y.202, H.209, M.213, H.282 Chain N: P.82, I.85, V.89 Ligands: BCL.30, BCL.34, BCL.36, BCL.38 9 PLIP interactions: 6 interactions with chain F, 3 interactions with chain N Hydrophobic interactions: F:L.82, F:L.82, F:L.83, F:L.83, F:L.86, F:Y.202, N:P.82, N:I.85, N:I.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, J.H. et al., Cryo-electron microscopy structure of the intact photosynthetic light-harvesting antenna-reaction center complex from a green sulfur bacterium. J Integr Plant Biol (2023)

Release Date

2022-11-23

Peptides

Bacteriochlorophyll a protein: ABCHIJ
P840 reaction center 17 kDa protein: D
Photosystem P840 reaction center iron-sulfur protein: E
Photosystem P840 reaction center, large subunit: FG
unkown protein: K
Ric1 protein: L
Cytochrome c: MN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
3

C
2

H
4

I
6

J
5

D
D

E
B

F
A

G
a

K
E

L
F

M
C

N
c

Membrane

We predict this structure to be a membrane protein.
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Bacteriochlorophyll a protein

P840 reaction center 17 kDa protein

Photosystem P840 reaction center iron-sulfur protein

Photosystem P840 reaction center, large subunit