SMTL ID : 7z8h.1

Cytoplasmic dynein-1 motor domain AAA1, AAA2, and AAA3 subunits

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: L.1879, V.1880, T.1882, T.1885, A.1908, G.1909, T.1910, G.1911, K.1912, T.1913, E.1914, D.1958, I.2049, L.2090, R.2091, K.2094 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:V.1880, A:V.1880, A:T.1885, A:G.1909, A:T.1910, A:G.1911, A:K.1912, A:T.1913, A:E.1914, A:E.1914, A:E.1914, A:K.2094 Salt bridges: A:K.1912

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)

ATP.2: 19 residues within 4Å: Chain A: L.2191, T.2192, W.2203, P.2225, S.2226, G.2227, S.2228, G.2229, K.2230, S.2231, M.2232, E.2344, L.2369, M.2373, N.2377, L.2452, R.2726, R.2729 Ligands: MG.4 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:T.2192, A:T.2192, A:P.2225, A:G.2227, A:S.2228, A:G.2229, A:K.2230, A:S.2231, A:S.2231, A:M.2232, A:R.2726, A:R.2729 Salt bridges: A:K.2230, A:R.2726, A:R.2726, A:R.2729, A:R.2729, A:R.2729

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.3: 17 residues within 4Å: Chain A: V.2568, V.2569, T.2571, T.2574, G.2598, S.2599, G.2600, K.2601, T.2602, M.2603, N.2713, I.2747, Y.2748, F.2751, P.2796, R.2797, T.2800 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:V.2569, A:V.2569, A:T.2574, A:G.2598, A:G.2600, A:K.2601, A:K.2601, A:K.2601, A:K.2601, A:T.2602, A:T.2602, A:T.2602, A:M.2603, A:R.2797, A:T.2800 Salt bridges: A:R.2797

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: S.2231, E.2344, R.2726 Ligands: ATP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.2231, A:E.2344

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaaban, S. et al., Structure of dynein-dynactin on microtubules shows tandem adaptor binding. Nature (2022)

Release Date

2022-07-27

Peptides

Cytoplasmic dynein 1 heavy chain 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytoplasmic dynein 1 heavy chain 1

Related Entries With Identical Sequence