SMTL ID : 7z8l.1

Cytoplasmic dynein light intermediate chain (B1) bound to the motor domain (A2).

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 9 residues within 4Å: Chain A: V.1880, A.1908, G.1909, T.1910, G.1911, K.1912, T.1913, E.1914, L.2090 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.1880, A:V.1880, A:G.1909, A:T.1910, A:G.1911, A:K.1912, A:T.1913, A:E.1914

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 13 residues within 4Å: Chain A: L.2191, T.2192, S.2226, G.2227, S.2228, G.2229, K.2230, S.2231, M.2232, M.2373, N.2377, R.2726 Ligands: MG.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.2192, A:T.2192, A:G.2227, A:S.2228, A:G.2229, A:K.2230, A:S.2231, A:M.2232

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: S.2231 Ligands: ATP.2 No protein-ligand interaction detected (PLIP)

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.4: 10 residues within 4Å: Chain A: V.2569, G.2598, S.2599, G.2600, K.2601, T.2602, M.2603, P.2796, R.2797, T.2800 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.2569, A:V.2569, A:G.2598, A:S.2599, A:G.2600, A:K.2601, A:T.2602, A:M.2603 ANP.5: 8 residues within 4Å: Chain A: P.2908, L.2909, V.2910, G.2940, G.2942, K.2943, T.2944, T.2945 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.2910, A:V.2910, A:G.2940, A:G.2942, A:K.2943

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaaban, S. et al., Structure of dynein-dynactin on microtubules shows tandem adaptor binding. Nature (2022)

Release Date

2022-07-27

Peptides

Cytoplasmic dynein 1 heavy chain 1: A
Cytoplasmic dynein 1 light intermediate chain 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
f

B
q

Cytoplasmic dynein 1 heavy chain 1

Cytoplasmic dynein 1 light intermediate chain 2

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