SMTL ID : 7zau.1 (3 other biounits)

Fascin-1 in complex with Nb 3E11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: H.397, N.412, H.479, A.480, G.481 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.412, A:A.480 EDO.2: 2 residues within 4Å: Chain A: T.294, D.295 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.172 EDO.3: 3 residues within 4Å: Chain A: F.186, S.415, Y.416 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.416 EDO.4: 5 residues within 4Å: Chain A: W.345, E.459, C.461, Y.474, V.490 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.459 EDO.5: 4 residues within 4Å: Chain A: G.104, W.106, V.139, L.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.104, A:L.219 EDO.6: 5 residues within 4Å: Chain A: F.423, N.424 Chain B: R.74, D.75, N.76 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.74, B:D.75, A:F.423 Water bridges: B:T.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burgess, S.G. et al., A nanobody inhibitor of Fascin-1 actin-bundling activity and filopodia formation. Open Biology (2024)

Release Date

2023-09-27

Peptides

Fascin: A
Nanobody 3E11: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fascin

Nanobody 3E11

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