SMTL ID : 7zgl.1 (2 other biounits)

Crystal structure of CYP125 from Mycobacterium tuberculosis in complex with an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x EIQ: ~{N}-[4-(pyridin-4-ylmethyl)phenyl]benzenesulfonamide(Non-covalent)

EIQ.1: 13 residues within 4Å: Chain A: I.82, Q.97, V.100, L.102, N.103, M.185, M.249, V.252, A.253, T.257, F.301, W.399 Ligands: HEM.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.82, A:L.102, A:V.252, A:A.253, A:T.257 Hydrogen bonds: A:N.103 Water bridges: A:Q.97, A:N.103

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 29 residues within 4Å: Chain A: M.101, L.102, H.109, R.113, F.120, M.249, L.250, A.253, G.254, T.257, T.258, S.261, P.297, V.298, F.301, R.303, Y.326, G.353, F.354, G.355, A.359, H.360, Y.361, C.362, I.363, G.364, L.367, A.368 Ligands: EIQ.1 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:F.120, A:L.250, A:A.253, A:V.298, A:F.301, A:F.301, A:Y.326, A:F.354, A:F.354, A:I.363, A:L.367 Hydrogen bonds: A:H.360 Salt bridges: A:H.109, A:R.113, A:R.303, A:H.360 pi-Stacking: A:F.354 Metal complexes: A:C.362

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: A.17 Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kavanagh, M. et al., Crystal structure of CYP125 from Mycobacterium tuberculosis in complex with an inhibitor. To Be Published

Release Date

2023-04-19

Peptides

Steroid C26-monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Steroid C26-monooxygenase

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