SMTL ID : 7zlz.3 (2 other biounits)

Crystal structure of CYP125 from Mycobacterium tuberculosis in complex with an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x JFC: ethyl 1-(2-morpholin-4-ylethyl)-5-pyridin-4-yl-indole-2-carboxylate(Non-covalent)

JFC.1: 24 residues within 4Å: Chain A: I.82, F.85, I.89, D.93, V.96, Q.97, V.100, L.102, M.185, T.186, N.188, P.198, S.202, I.206, F.245, V.248, M.249, V.252, A.253, T.257, V.298, F.301, W.399 Ligands: HEM.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.82, A:V.100, A:L.102, A:V.252, A:V.252, A:A.253, A:W.399

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 34 residues within 4Å: Chain A: M.101, L.102, H.109, R.113, F.120, I.164, L.167, M.249, L.250, A.253, G.254, T.257, T.258, S.261, V.292, P.297, V.298, F.301, R.303, Y.326, G.353, F.354, G.355, G.356, A.359, H.360, Y.361, C.362, I.363, G.364, L.367, A.368, I.372 Ligands: JFC.1 20 PLIP interactions: 19 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:L.102, A:F.120, A:L.250, A:P.297, A:F.301, A:Y.326, A:F.354, A:I.363, A:L.367, A:A.368 Water bridges: A:Y.326, A:Y.326, A:H.360 Salt bridges: A:H.109, A:R.113, A:R.303, A:H.360 pi-Stacking: A:F.354 Metal complexes: A:C.362, H2O.2

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: A.17, R.396 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.396 SO4.4: 5 residues within 4Å: Chain A: E.271, H.272, P.273, D.274, Q.275 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.271, A:D.274, A:D.274, A:D.274, A:Q.275 SO4.5: 3 residues within 4Å: Chain A: P.44, G.45, H.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.45 Water bridges: A:H.51 Salt bridges: A:H.51 SO4.6: 6 residues within 4Å: Chain A: R.84, K.86, N.87, D.88, E.189, R.396 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.87, A:E.189, A:E.189 Water bridges: A:R.84 Salt bridges: A:R.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katariya, M.M. et al., Structure Based Discovery of Inhibitors of CYP125 and CYP142 from Mycobacterium tuberculosis. Chemistry (2023)

Release Date

2023-04-05

Peptides

Steroid C26-monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Steroid C26-monooxygenase

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