SMTL ID : 7zgt.1

C-Methyltransferase PsmD from Streptomyces griseofuscus (apo form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: H.225, R.229 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.229 Salt bridges: A:H.225, A:R.229 PO4.2: 3 residues within 4Å: Chain A: S.87, E.88, T.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.88 PO4.4: 3 residues within 4Å: Chain B: H.225, R.229, V.242 4 PLIP interactions: 4 interactions with chain B Water bridges: B:V.242, B:V.242 Salt bridges: B:H.225, B:R.229

1 x K: POTASSIUM ION(Non-covalent)

K.3: 5 residues within 4Å: Chain B: N.169, R.170, V.171, D.184, F.185 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:N.169, B:D.184, B:F.185, H2O.3

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 1 residues within 4Å: Chain B: W.34 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amariei, D.A. et al., Enzymatic C3-Methylation of Indoles Using Methyltransferase PsmD-Crystal Structure, Catalytic Mechanism, and Preparative Applications. Acs Catalysis (2022)

Release Date

2022-12-28

Peptides

Methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Methyltransferase

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