SMTL ID : 7zjo.1 (1 other biounit)

Phosphorylated Thalassospira sp. esterase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

1 x NPO: P-NITROPHENOL(Non-covalent)

NPO.1: 12 residues within 4Å: Chain A: P.21, I.23, V.34, L.35, A.86, M.90, W.206, L.207, F.215, H.285, D.286 Ligands: 1PE.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.206 pi-Stacking: A:W.206, A:W.206

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 13 residues within 4Å: Chain A: F.11, L.15, A.17, S.18, P.21, A.22, I.23, T.25, L.26, V.34, A.38, W.206 Ligands: NPO.1 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.66, T.93, G.94 Ligands: EDO.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.93 Water bridges: A:R.66, A:R.66 Salt bridges: A:R.66

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: R.32, Y.116, E.117, R.118, E.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.116, A:R.118, A:R.118, A:R.118 EDO.5: 8 residues within 4Å: Chain A: D.190, D.192, N.195, G.196, I.234, D.259, E.260, A.263 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.190, A:N.195 Water bridges: A:D.192, A:G.196 EDO.6: 7 residues within 4Å: Chain A: D.52, K.64, R.66, D.92, T.93, D.115 Ligands: SO4.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.52, A:K.64, A:T.93 Water bridges: A:D.52, A:T.93 EDO.7: 7 residues within 4Å: Chain A: Q.172, D.178, I.179, T.180, G.243, Q.244, A.245 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.178, A:D.178, A:I.179, A:I.179 Water bridges: A:Q.172 EDO.8: 7 residues within 4Å: Chain B: D.52, T.53, K.64, V.65, R.66, T.93, D.115 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.53, B:V.65, B:D.115 Water bridges: B:T.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lund, B.A., Phosphorylated Thalassospira sp. esterase. To Be Published

Release Date

2025-10-29

Peptides

Lipase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

Lipase

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