SMTL ID : 7zjo.2 (1 other biounit)

Phosphorylated Thalassospira sp. esterase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x NPO: P-NITROPHENOL(Non-covalent)

NPO.1: 13 residues within 4Å: Chain A: P.21, I.23, V.34, L.35, A.86, M.90, S.158, W.206, L.207, F.215, H.285, D.286 Ligands: 1PE.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.23 Hydrogen bonds: A:W.206 Water bridges: A:H.285 pi-Stacking: A:W.206, A:W.206 NPO.8: 9 residues within 4Å: Chain B: I.23, V.34, L.35, M.90, W.206, L.207, F.215, H.285, D.286 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.23, B:I.23 Hydrogen bonds: B:W.206 Water bridges: B:T.208 pi-Stacking: B:W.206, B:W.206

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: D.190, D.192, N.195, I.234, D.259, E.260, A.263 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.190, A:D.190, A:N.195 Water bridges: A:D.192 EDO.6: 5 residues within 4Å: Chain A: R.32, Y.116, E.117, R.118, E.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.116, A:R.118, A:R.118, A:R.118 EDO.7: 7 residues within 4Å: Chain A: Y.124, P.125, I.128, E.129, L.170, R.174, K.230 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.129, A:R.174 EDO.9: 4 residues within 4Å: Chain B: R.32, E.117, R.118, E.121 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.118, B:R.118, B:R.118 Water bridges: B:R.32

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.66, T.93, G.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.93 Water bridges: A:R.66, A:R.66 Salt bridges: A:R.66 SO4.5: 4 residues within 4Å: Chain A: R.258, R.279 Chain B: R.258, R.279 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Water bridges: A:R.258, A:R.258, A:R.279, B:R.279, B:R.279 Salt bridges: A:R.258, A:R.279, B:R.279

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.4: 10 residues within 4Å: Chain A: L.15, A.17, S.18, P.21, A.22, I.23, T.25, L.26, V.34 Ligands: NPO.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lund, B.A., Phosphorylated Thalassospira sp. esterase. To Be Published

Release Date

2025-10-29

Peptides

Lipase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Lipase

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