SMTL ID : 7zjv.1

Structure of human USPL1 in covalent complex with DeltaN-SUMO2/3-PA probe

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.146, C.149, C.182, C.185 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.146, A:C.149, A:C.182, A:C.185

1 x AYE: prop-2-en-1-amine(Covalent)

AYE.2: 7 residues within 4Å: Chain A: A.19, C.21, W.22, M.115, N.240, H.241 Chain B: G.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.240

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: I.191 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: Q.105, T.111 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: Q.213, N.214 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: Q.9, V.70 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: D.47, Q.49 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Z. et al., Native Semisynthesis of Isopeptide-Linked Substrates for Specificity Analysis of Deubiquitinases and Ubl Proteases. J.Am.Chem.Soc. (2023)

Release Date

2023-09-27

Peptides

SUMO-specific isopeptidase USPL1: A
Small ubiquitin-related modifier 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SUMO-specific isopeptidase USPL1

Small ubiquitin-related modifier 2

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