SMTL ID : 7zl7.1 (1 other biounit)

Human GABARAP in complex with stapled peptide Pen8-ortho

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-mer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: K.4, F.5, K.8 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: K.68, R.69 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.73, A.74 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: P.12, F.13, E.14 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: S.90, A.91, Q.95 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.90, A:Q.95

1 x OXE: ORTHO-XYLENE(Covalent)

OXE.6: 6 residues within 4Å: Chain A: Y.27, L.52 Chain B: X.1, C.4, W.7, X.9 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.27, A:L.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brown, H. et al., Structure-Based Design of Stapled Peptides That Bind GABARAP and Inhibit Autophagy. J.Am.Chem.Soc. (2022)

Release Date

2022-08-31

Peptides

Gamma-aminobutyric acid receptor-associated protein: A
Pen8-ortho: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gamma-aminobutyric acid receptor-associated protein

Pen8-ortho

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