SMTL ID : 7zsd.1

cryo-EM structure of omicron spike in complex with de novo designed binder, local

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: D.8, N.12, V.36, L.40 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gainza, P. et al., De novo design of protein interactions with learned surface fingerprints. Nature (2023)

Release Date

2023-03-01

Peptides

Spike glycoprotein: A
de novo designed binder: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
P

Spike glycoprotein

de novo designed binder

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