SMTL ID : 7zyz.1

Cryo-EM structure of "CT oxa" conformation of Lactococcus lactis pyruvate carboxylase with acetyl-CoA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.540, K.709, H.738, H.740 Ligands: OAA.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.540, A:H.738, A:H.740, H2O.1

1 x OAA: OXALOACETATE ION(Non-covalent)

OAA.2: 13 residues within 4Å: Chain A: R.539, D.540, Q.543, G.577, A.578, L.610, R.612, F.645, K.709, M.711, V.872, T.873 Ligands: MN.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.872 Hydrogen bonds: A:R.539, A:R.539, A:Q.543, A:A.578, A:T.873, A:T.873, A:T.873 Water bridges: A:D.540, A:Q.835 Salt bridges: A:R.539, A:R.612

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lopez-Alonso, J.P. et al., CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase. Nat Commun (2022)

Release Date

2022-10-12

Peptides

Pyruvate carboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pyruvate carboxylase

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