SMTL ID : 8a3d.1

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 1.67 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
229 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
155 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
2 x NA: SODIUM ION(Non-functional Binders)
1 x HMT: (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine(Non-functional Binders)
1 x SPM: SPERMINE(Non-covalent)
1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
5 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Faille, A. et al., The chemical landscape of the human ribosome at 1.67 angstrom resolution. Biorxiv (2023)
Release Date
2023-03-08
Peptides
60S ribosomal protein L8: D
60S ribosomal protein L3: E
60S ribosomal protein L4: F
60S ribosomal protein L5: G
60S ribosomal protein L6: H
60S ribosomal protein L7: I
60S ribosomal protein L7a: J
60S ribosomal protein L9: K
60S ribosomal protein L10: L
60S ribosomal protein L11: M
60S ribosomal protein L13: N
60S ribosomal protein L14: O
60S ribosomal protein L15: P
60S ribosomal protein L13a: Q
60S ribosomal protein L17: R
60S ribosomal protein L18: S
60S ribosomal protein L19: T
60S ribosomal protein L18a: U
60S ribosomal protein L21: V
60S ribosomal protein L22: W
60S ribosomal protein L23: X
60S ribosomal protein L24: Y
60S ribosomal protein L23a: Z
60S ribosomal protein L26: 0
60S ribosomal protein L27: 1
60S ribosomal protein L27a: 2
60S ribosomal protein L29: 3
60S ribosomal protein L30: 4
60S ribosomal protein L31: 5
60S ribosomal protein L32: 6
60S ribosomal protein L35a: 7
60S ribosomal protein L34: 8
Ribosomal protein uL29: 9
60S ribosomal protein L36: a
60S ribosomal protein L37: b
60S ribosomal protein L38: c
60S ribosomal protein L39: d
Ubiquitin-60S ribosomal protein L40: e
60S ribosomal protein L36a: f
60S ribosomal protein L37a: g
60S ribosomal protein L28: h
Eukaryotic translation initiation factor 6: i
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
D
D
E
E
F
F
G
G
H
H
I
m
J
n
K
o
L
p
M
q
N
r
O
s
P
l
Q
I
R
J
S
K
T
L
U
M
V
N
W
O
X
P
Y
Q
Z
R
0
S
1
T
2
U
3
V
4
W
5
X
6
Y
7
Z
8
a
9
b
a
c
b
d
c
e
d
f
e
g
f
i
g
j
h
k
i
h

60S ribosomal protein L8

60S ribosomal protein L3

60S ribosomal protein L4

60S ribosomal protein L5

60S ribosomal protein L6

60S ribosomal protein L7

60S ribosomal protein L7a

60S ribosomal protein L9

60S ribosomal protein L10

60S ribosomal protein L11

60S ribosomal protein L13

60S ribosomal protein L14

60S ribosomal protein L15

60S ribosomal protein L13a

60S ribosomal protein L17

60S ribosomal protein L18

60S ribosomal protein L19

60S ribosomal protein L18a

60S ribosomal protein L21

60S ribosomal protein L22

60S ribosomal protein L23

60S ribosomal protein L24

60S ribosomal protein L23a

60S ribosomal protein L26

60S ribosomal protein L27

60S ribosomal protein L27a

60S ribosomal protein L29

60S ribosomal protein L30

60S ribosomal protein L31

60S ribosomal protein L32

60S ribosomal protein L35a

60S ribosomal protein L34

Ribosomal protein uL29

60S ribosomal protein L36

60S ribosomal protein L37

60S ribosomal protein L38

60S ribosomal protein L39

Ubiquitin-60S ribosomal protein L40

60S ribosomal protein L36a

60S ribosomal protein L37a

60S ribosomal protein L28

Eukaryotic translation initiation factor 6

Related Entries With Identical Sequence

3j7o.1 | 3j7q.1 | 3j92.1 | 4d5y.1 | 4d67.1 | 4v5z.17 | 4v5z.20 | 4v5z.21 | 4v5z.27 | 4v5z.29 | 4v5z.32 | 4v5z.34 | 4v5z.35 | 4v5z.36 | 4v5z.37 | 4v5z.40 | 4v5z.41 | 4v5z.43 | 4v5z.44 | 4v5z.45 | 4v5z.46 | 4v5z.48 | 4xxb.1 | 5a8l.1 | 5aj0.1 | 5aj0.2 | 5aj0.3 | 5aj0.4 | 5aj0.5 | 5aj0.6  more...