8oj0.1 | SWISS-MODEL Template Library

SMTL ID : 8oj0.1

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

220 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

5 x ZN: ZINC ION(Non-covalent)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

DaRosa, P.A. et al., UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER. Nature (2024)

Release Date

2024-02-21

Peptides

Protein transport protein Sec61 subunit alpha isoform 1: A
Protein transport protein Sec61 subunit gamma: B
Protein transport protein Sec61 subunit beta: C
E3 UFM1-protein ligase 1: G
CDK5 regulatory subunit-associated protein 3: H
DDRGK domain-containing protein 1: I
Ubiquitin-fold modifier 1: J
Eukaryotic translation initiation factor 6: K
60S ribosomal protein L8: L
60S ribosomal protein L3: M
60S ribosomal protein L4: N
60S ribosomal protein L5: O
60S ribosomal protein L6: P
60S ribosomal protein L7: Q
60S ribosomal protein L7a: R
60S ribosomal protein L9: S
Ribosomal protein uL16-like: T
60S ribosomal protein L11: U
60S ribosomal protein L13: V
60S ribosomal protein L14: W
60S ribosomal protein L15: X
60S ribosomal protein L13a: Y
60S ribosomal protein L17: Z
60S ribosomal protein L18: 0
60S ribosomal protein L19: 1
60S ribosomal protein L18a: 2
60S ribosomal protein L21: 3
60S ribosomal protein L22: 4
60S ribosomal protein L23: 5
60S ribosomal protein L24: 6
60S ribosomal protein L23a: 7
60S ribosomal protein L26: 8
60S ribosomal protein L27: 9
60S ribosomal protein L27a: a
60S ribosomal protein L29: b
60S ribosomal protein L30: c
60S ribosomal protein L31: d
60S ribosomal protein L32: e
60S ribosomal protein L35a: f
60S ribosomal protein L34: g
60S ribosomal protein L35: h
60S ribosomal protein L36: i
60S ribosomal protein L37: j
60S ribosomal protein L38: k
60S ribosomal protein L39: l
Ubiquitin-60S ribosomal protein L40: m
60S ribosomal protein L36a: n
60S ribosomal protein L37a: o
60S ribosomal protein L28: p
60S ribosomal protein L10a: q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

G
A

H
B

I
C

J
D

K
K

L
LA

M
LB

N
LC

O
LD

P
LE

Q
LF

R
LG

S
LH

T
LI

U
LJ

V
LL

W
LM

X
LN

Y
LO

Z
LP

0
LQ

1
LR

2
LS

3
LT

4
LU

5
LV

6
LW

7
LX

8
LY

9
LZ

a
La

b
Lb

c
Lc

d
Ld

e
Le

f
Lf

g
Lg

h
Lh

i
Li

j
Lj

k
Lk

l
Ll

m
Lm

n
Lo

o
Lp

p
Lr

q
Lz

Membrane

We predict this structure to be a membrane protein.
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Protein transport protein Sec61 subunit alpha isoform 1

Protein transport protein Sec61 subunit gamma

Protein transport protein Sec61 subunit beta

E3 UFM1-protein ligase 1

CDK5 regulatory subunit-associated protein 3

DDRGK domain-containing protein 1

Ubiquitin-fold modifier 1

Eukaryotic translation initiation factor 6

60S ribosomal protein L8

60S ribosomal protein L3

60S ribosomal protein L4

60S ribosomal protein L5

60S ribosomal protein L6

60S ribosomal protein L7

60S ribosomal protein L7a

60S ribosomal protein L9

Ribosomal protein uL16-like

60S ribosomal protein L11

60S ribosomal protein L13

60S ribosomal protein L14

60S ribosomal protein L15

60S ribosomal protein L13a

60S ribosomal protein L17

60S ribosomal protein L18

60S ribosomal protein L19

60S ribosomal protein L18a

60S ribosomal protein L21

60S ribosomal protein L22

60S ribosomal protein L23

60S ribosomal protein L24

60S ribosomal protein L23a

60S ribosomal protein L26

60S ribosomal protein L27

60S ribosomal protein L27a

60S ribosomal protein L29

60S ribosomal protein L30

60S ribosomal protein L31

60S ribosomal protein L32

60S ribosomal protein L35a

60S ribosomal protein L34

60S ribosomal protein L35

60S ribosomal protein L36

60S ribosomal protein L37

60S ribosomal protein L38

60S ribosomal protein L39

Ubiquitin-60S ribosomal protein L40

60S ribosomal protein L36a

60S ribosomal protein L37a

60S ribosomal protein L28

60S ribosomal protein L10a

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