SMTL ID : 8ab5.1 (1 other biounit)

Structure of E. coli GlpG in complex with peptide derived inhibitor Ac-VRHA-conh-[4-(4-butyl)-phenoxy-1-phenyl-2-butyl]

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ACE- VAL- ARG- HIS- LPV: Ac-VRHA-conh-[4-(4-butyl)-phenoxy-1-phenyl-2-butyl](Non-covalent)

ACE-VAL-ARG-HIS-LPV.1: 24 residues within 4Å: Chain A: F.56, H.60, F.63, N.64, W.67, Q.99, S.103, W.106, F.107, G.108, G.109, L.110, S.111, V.114, Y.115, W.146, D.153, F.155, M.157, S.158, M.159, A.160, N.161, H.164 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.56, A:F.56, A:V.114, A:Y.115, A:W.146, A:F.155, A:F.155 Hydrogen bonds: A:H.60, A:N.64, A:W.106, A:G.108, A:G.108, A:S.111, A:S.158, A:S.158, A:M.159, A:M.159, A:A.160, A:N.161, A:H.164 Water bridges: A:D.153 Salt bridges: A:D.153 pi-Stacking: A:H.60, A:F.63, A:F.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bach, K. et al., Extensive targeting of chemical space at the prime side of ketoamide inhibitors of rhomboid proteases by branched substituents empowers their selectivity and potency. Eur.J.Med.Chem. (2024)

Release Date

2023-10-25

Peptides

Rhomboid protease GlpG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Rhomboid protease GlpG

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