SMTL ID : 8aeu.1

Structure of hMDM2 in complex with Nutlin-3a-aa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.1: 4 residues within 4Å: Chain A: E.79, H.80, R.81, K.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.81, A:K.82 BME.3: 4 residues within 4Å: Chain B: E.79, H.80, R.81, K.82 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.81, B:K.82

2 x M0L: 4-[[(4~{S},5~{R})-4,5-bis(4-chlorophenyl)-2-(4-methoxy-2-propan-2-yloxy-phenyl)-4,5-dihydroimidazol-1-yl]carbonyl]-3-methylidene-piperazin-2-one(Non-covalent)

M0L.2: 10 residues within 4Å: Chain A: L.38, L.41, G.42, I.45, M.46, Q.56 Chain B: V.77, H.80, I.83, Y.84 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.38, A:L.41, A:I.45, A:I.45, B:V.77, B:I.83 M0L.4: 10 residues within 4Å: Chain A: V.77, H.80, I.83, Y.84 Chain B: L.38, L.41, G.42, I.45, M.46, Q.56 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:V.77, A:I.83, B:L.38, B:L.41, B:I.45, B:I.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nietzold, F. et al., Nutlin-3a-aa: Improving the Bioactivity of a p53/MDM2 Interaction Inhibitor by Introducing a Solvent-Exposed Methylene Group. Chembiochem (2023)

Release Date

2023-01-18

Peptides

E3 ubiquitin-protein ligase Mdm2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

E3 ubiquitin-protein ligase Mdm2

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