SMTL ID : 8ao4.1

Specific covalent inhibitor (5) of ERK2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.195, R.199, R.202, Y.241 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.199, A:R.199, A:R.202, A:R.202 Salt bridges: A:R.199, A:R.202

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: L.273, S.274, L.275, P.276 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.273

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 1 residues within 4Å: Chain A: I.264 No protein-ligand interaction detected (PLIP)

1 x N8U: ~{N}-(1~{H}-indazol-5-yl)ethanesulfonamide(Covalent)

N8U.4: 13 residues within 4Å: Chain A: V.47, A.60, K.62, I.92, Q.113, D.114, L.115, M.116, S.161, N.162, L.164, C.174, D.175 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.47, A:L.164, A:D.175 Hydrogen bonds: A:K.62, A:D.114, A:M.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

St Denis, J.D. et al., X-ray Screening of an Electrophilic Fragment Library and Application toward the Development of a Novel ERK 1/2 Covalent Inhibitor. J.Med.Chem. (2022)

Release Date

2022-09-28

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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