SMTL ID : 8aof.1

Specific covalent inhibitor(16) of ERK2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Y.195, R.199, R.202, H.240, Y.241 5 PLIP interactions: 5 interactions with chain A Water bridges: A:Y.195, A:Y.241, A:Y.241 Salt bridges: A:R.199, A:R.202

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.3: 2 residues within 4Å: Chain A: K.125, T.126 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.124, A:K.125

1 x N4U: ~{N}-(2-methylpyrimidin-5-yl)propanamide(Covalent)

N4U.4: 9 residues within 4Å: Chain A: I.39, V.47, A.60, L.115, S.161, N.162, L.164, C.174, D.175 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.39, A:A.60, A:L.115, A:D.175 Water bridges: A:D.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

St Denis, J.D. et al., X-ray Screening of an Electrophilic Fragment Library and Application toward the Development of a Novel ERK 1/2 Covalent Inhibitor. J.Med.Chem. (2022)

Release Date

2022-09-28

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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