SMTL ID : 8aqa.1

Crystal Structure of Unlinked NS2B-NS3 Protease from Zika Virus in Complex with Inhibitor MI-2260

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

hetero-1-1-mer

Ligands

1 x V7T- GLY- V8N- LDO- LYS: (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside(Non-covalent)

V7T-GLY-V8N-LDO-LYS.1: 19 residues within 4Å: Chain A: G.39, D.40, F.41, S.42 Chain B: H.52, D.130, Y.131, P.132, A.133, S.136, Y.151, G.152, N.153, G.154, V.155, V.156, G.160, S.161, Y.162 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.156, B:Y.162, B:Y.162 Hydrogen bonds: B:S.136, B:G.152, B:N.153, B:G.154, B:G.160, B:Y.162, A:D.40 Water bridges: B:H.52, B:D.130, B:Y.131, B:A.133, B:G.160 Salt bridges: B:D.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huber, S. et al., Synthesis and structural characterization of new macrocyclic inhibitors of the Zika virus NS2B-NS3 protease. Arch Pharm (2024)

Release Date

2022-12-21

Peptides

Serine protease subunit NS2B: A
Serine protease NS3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine protease subunit NS2B

Serine protease NS3

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