SMTL ID : 8asb.1

Structure of the SFTSV L protein stalled at early elongation with the endonuclease domain in a raised conformation [EARLY-ELONGATION-ENDO]

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.985, A.986, D.1126 Chain D: A.3 Ligands: 2KH.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.985, A:D.985, A:D.1126

1 x 2KH: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine(Non-covalent)

2KH.2: 15 residues within 4Å: Chain A: K.913, R.920, D.985, A.986, K.988, W.989, N.990, Q.1080, G.1081, D.1126, K.1170 Chain C: G.23, U.24 Chain D: A.3 Ligands: MG.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.920, A:R.920, A:K.988, A:W.989, A:N.990, A:N.990, A:G.1081, A:S.1125 Salt bridges: A:K.689, A:K.1170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, H.M. et al., Structural insights into viral genome replication by the severe fever with thrombocytopenia syndrome virus L protein. Nucleic Acids Res. (2023)

Release Date

2023-01-18

Peptides

RNA-dependent RNA-polymerase L protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-dependent RNA-polymerase L protein

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