SMTL ID : 8r6y.1

Structure of the SFTSV L protein stalled in a transcription-specific early elongation state with bound capped RNA [TRANSCRIPTION-EARLY-ELONGATION]

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x A- C- A: RNA (5'-R(P*AP*CP*A)-3')(Non-covalent)

A-C-A.1: 13 residues within 4Å: Chain A: H.1084, S.1125, D.1126, N.1182, S.1183, R.1197, Q.1204, Q.1224 Chain C: A.15, U.16, G.17, U.18 Ligands: 2KH.2 Protein-ligand interaction information (PLIP) not available

1 x 2KH: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine(Non-covalent)

2KH.2: 16 residues within 4Å: Chain A: K.913, R.920, D.985, A.986, K.987, K.988, W.989, N.990, Q.1080, G.1081, S.1125, D.1126, K.1170 Chain C: A.15 Ligands: A-C-A.1, MG.3 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.913, A:R.920, A:R.920, A:K.987, A:W.989, A:N.990, A:N.990, A:G.1081, A:S.1125 Salt bridges: A:K.1170

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.985, A.986, D.1126 Ligands: 2KH.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.985, A:A.986, A:D.1126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, H.M. et al., Structural snapshots of phenuivirus cap-snatching and transcription. Nucleic Acids Res. (2024)

Release Date

2024-04-24

Peptides

RNA-directed RNA polymerase L: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase L

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