- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-pentamer
- Ligands
- 25 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)
POV.1: 14 residues within 4Å:- Chain A: F.267, I.271, T.274, V.275, Y.278, L.279, Q.284, R.287
- Chain E: F.210, W.213, T.214, W.217
- Ligands: POV.2, POV.24
Ligand excluded by PLIPPOV.2: 15 residues within 4Å:- Chain A: L.264, F.265, V.268, E.272, V.275, A.286, R.287, S.290, I.291, A.294, S.295, A.298, F.299, V.302
- Ligands: POV.1
Ligand excluded by PLIPPOV.3: 9 residues within 4Å:- Chain A: R.117, R.118, M.252, A.257, F.260, M.261, L.310, L.313, F.314
Ligand excluded by PLIPPOV.4: 7 residues within 4Å:- Chain A: F.210, R.293, I.297, P.300, F.303, L.304
- Ligands: POV.6
Ligand excluded by PLIPPOV.5: 9 residues within 4Å:- Chain A: F.121, Y.194, I.198, I.202, L.206, Y.254, I.258, N.307, F.315
Ligand excluded by PLIPPOV.6: 14 residues within 4Å:- Chain A: F.210, W.213, T.214, W.217
- Chain B: F.267, I.271, T.274, V.275, Y.278, L.279, Q.284, R.287
- Ligands: POV.4, POV.7
Ligand excluded by PLIPPOV.7: 15 residues within 4Å:- Chain B: L.264, F.265, V.268, E.272, V.275, A.286, R.287, S.290, I.291, A.294, S.295, A.298, F.299, V.302
- Ligands: POV.6
Ligand excluded by PLIPPOV.8: 9 residues within 4Å:- Chain B: R.117, R.118, M.252, A.257, F.260, M.261, L.310, L.313, F.314
Ligand excluded by PLIPPOV.9: 7 residues within 4Å:- Chain B: F.210, R.293, I.297, P.300, F.303, L.304
- Ligands: POV.11
Ligand excluded by PLIPPOV.10: 9 residues within 4Å:- Chain B: F.121, Y.194, I.198, I.202, L.206, Y.254, I.258, N.307, F.315
Ligand excluded by PLIPPOV.11: 14 residues within 4Å:- Chain B: F.210, W.213, T.214, W.217
- Chain C: F.267, I.271, T.274, V.275, Y.278, L.279, Q.284, R.287
- Ligands: POV.9, POV.12
Ligand excluded by PLIPPOV.12: 15 residues within 4Å:- Chain C: L.264, F.265, V.268, E.272, V.275, A.286, R.287, S.290, I.291, A.294, S.295, A.298, F.299, V.302
- Ligands: POV.11
Ligand excluded by PLIPPOV.13: 9 residues within 4Å:- Chain C: R.117, R.118, M.252, A.257, F.260, M.261, L.310, L.313, F.314
Ligand excluded by PLIPPOV.14: 7 residues within 4Å:- Chain C: F.210, R.293, I.297, P.300, F.303, L.304
- Ligands: POV.16
Ligand excluded by PLIPPOV.15: 9 residues within 4Å:- Chain C: F.121, Y.194, I.198, I.202, L.206, Y.254, I.258, N.307, F.315
Ligand excluded by PLIPPOV.16: 14 residues within 4Å:- Chain C: F.210, W.213, T.214, W.217
- Chain D: F.267, I.271, T.274, V.275, Y.278, L.279, Q.284, R.287
- Ligands: POV.14, POV.17
Ligand excluded by PLIPPOV.17: 15 residues within 4Å:- Chain D: L.264, F.265, V.268, E.272, V.275, A.286, R.287, S.290, I.291, A.294, S.295, A.298, F.299, V.302
- Ligands: POV.16
Ligand excluded by PLIPPOV.18: 9 residues within 4Å:- Chain D: R.117, R.118, M.252, A.257, F.260, M.261, L.310, L.313, F.314
Ligand excluded by PLIPPOV.19: 7 residues within 4Å:- Chain D: F.210, R.293, I.297, P.300, F.303, L.304
- Ligands: POV.21
Ligand excluded by PLIPPOV.20: 9 residues within 4Å:- Chain D: F.121, Y.194, I.198, I.202, L.206, Y.254, I.258, N.307, F.315
Ligand excluded by PLIPPOV.21: 14 residues within 4Å:- Chain D: F.210, W.213, T.214, W.217
- Chain E: F.267, I.271, T.274, V.275, Y.278, L.279, Q.284, R.287
- Ligands: POV.19, POV.22
Ligand excluded by PLIPPOV.22: 15 residues within 4Å:- Chain E: L.264, F.265, V.268, E.272, V.275, A.286, R.287, S.290, I.291, A.294, S.295, A.298, F.299, V.302
- Ligands: POV.21
Ligand excluded by PLIPPOV.23: 9 residues within 4Å:- Chain E: R.117, R.118, M.252, A.257, F.260, M.261, L.310, L.313, F.314
Ligand excluded by PLIPPOV.24: 7 residues within 4Å:- Chain E: F.210, R.293, I.297, P.300, F.303, L.304
- Ligands: POV.1
Ligand excluded by PLIPPOV.25: 9 residues within 4Å:- Chain E: F.121, Y.194, I.198, I.202, L.206, Y.254, I.258, N.307, F.315
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bergh, C. et al., Discovery of lipid binding sites in a ligand-gated ion channel by integrating simulations and cryo-EM. Elife (2024)
- Release Date
- 2023-09-06
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-pentamer
- Ligands
- 25 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bergh, C. et al., Discovery of lipid binding sites in a ligand-gated ion channel by integrating simulations and cryo-EM. Elife (2024)
- Release Date
- 2023-09-06
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.