SMTL ID : 8aun.1 (1 other biounit)

OPR3 Y370F variant in complex with ethyl (Z)-2-(hydroxyimino)-3-oxobutanoate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: A.30, P.31, M.32, T.33, G.64, Q.106, H.185, H.188, R.237, Y.284, S.319, G.320, G.321, Y.341, G.342, R.343, F.369, F.370 Ligands: L9I.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:M.32, A:R.343, A:F.369, A:F.370 Hydrogen bonds: A:P.31, A:T.33, A:G.64, A:Q.106, A:Q.106, A:R.237, A:R.237, A:Y.284, A:S.319, A:G.320, A:G.321, A:Y.322, A:G.342, A:R.343 Water bridges: A:R.343, A:L.344 Salt bridges: A:R.343

1 x L9I: ethyl (2Z)-2-hydroxyimino-3-oxidanylidene-butanoate(Non-covalent)

L9I.2: 8 residues within 4Å: Chain A: F.74, H.185, H.188, Y.190, H.244, Y.284, A.286 Ligands: FMN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.74, A:Y.284, A:A.286 Hydrogen bonds: A:H.185 Water bridges: A:Y.284 Salt bridges: A:H.188, A:H.244

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: Y.118, Q.119, P.120 3 PLIP interactions: 3 interactions with chain A Water bridges: A:V.117, A:A.121, A:G.122 EDO.4: 7 residues within 4Å: Chain A: L.140, M.141, P.142, G.144, F.370, T.371, Q.372 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.372, A:Q.372 EDO.5: 6 residues within 4Å: Chain A: L.211, R.214, D.249, N.251, S.254, L.255 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.214, A:R.214, A:D.249 Water bridges: A:L.211, A:N.251

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 8 residues within 4Å: Chain A: S.68, P.69, T.70, I.126, R.153, E.159, V.163, D.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.70 Water bridges: A:D.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Breukelaar, W.B. et al., Mechanistic Insights into the Ene-Reductase-Catalyzed Promiscuous Reduction of Oximes to Amines. Acs Catalysis (2023)

Release Date

2023-03-01

Peptides

12-oxophytodienoate reductase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

12-oxophytodienoate reductase 3

Related Entries With Identical Sequence