SMTL ID : 8auq.1 (1 other biounit)

OPR3 Y370F variant in complex with ethyl (Z)-2-(hydroxyimino)-3-oxopentanoate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: A.30, P.31, M.32, T.33, G.64, Q.106, H.185, H.188, R.237, Y.284, S.319, G.320, G.321, Y.341, G.342, R.343, F.369, F.370 Ligands: O8I.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:M.32, A:R.343, A:F.369, A:F.370 Hydrogen bonds: A:P.31, A:T.33, A:G.64, A:Q.106, A:Q.106, A:R.237, A:R.237, A:Y.284, A:S.319, A:G.320, A:G.321, A:Y.322, A:G.342, A:R.343 Water bridges: A:R.343, A:L.344 Salt bridges: A:R.343

1 x O8I: ethyl (2~{Z})-2-hydroxyimino-3-oxidanylidene-pentanoate(Non-covalent)

O8I.2: 13 residues within 4Å: Chain A: T.33, F.74, W.108, H.185, H.188, Y.190, I.242, H.244, Y.284, V.285, A.286, F.370 Ligands: FMN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.74, A:Y.284, A:A.286, A:F.370 Hydrogen bonds: A:H.188 Water bridges: A:Y.284 Salt bridges: A:H.188, A:H.244

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 6 residues within 4Å: Chain A: I.41, P.42, Q.43, A.44, E.84, E.88 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.42, A:E.88, A:E.88 Water bridges: A:Q.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Breukelaar, W.B. et al., Mechanistic Insights into the Ene-Reductase-Catalyzed Promiscuous Reduction of Oximes to Amines. Acs Catalysis (2023)

Release Date

2023-03-01

Peptides

12-oxophytodienoate reductase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

12-oxophytodienoate reductase 3

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