SMTL ID : 8axp.1 (1 other biounit)

Neisseria gonorrhoeae peptidyl-tRNA hydrolase complexed with an XChem hit.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x O0J: N-[4-(2-amino-1,3-thiazol-4-yl)phenyl]acetamide(Non-covalent)

O0J.1: 9 residues within 4Å: Chain A: H.23, D.96, L.98, G.114, G.115, H.116, N.117, V.148, V.151 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:N.117, A:V.148, A:V.151 Hydrogen bonds: A:D.96, A:N.117 pi-Cation interactions: A:H.116

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.108, R.135 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.108, A:R.135 SO4.3: 3 residues within 4Å: Chain A: R.22, Y.150, N.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.153 Salt bridges: A:R.22 SO4.4: 2 residues within 4Å: Chain A: R.72, K.125 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.72, A:K.125 SO4.5: 3 residues within 4Å: Chain A: N.113, K.120, Q.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.113 Salt bridges: A:K.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hassell-Hart, S. et al., Synthesis of a Thiazole Library via an Iridium-Catalyzed Sulfur Ylide Insertion Reaction. Org.Lett. (2022)

Release Date

2022-11-09

Peptides

Peptidyl-tRNA hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peptidyl-tRNA hydrolase

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