SMTL ID : 8axp.2 (1 other biounit)

Neisseria gonorrhoeae peptidyl-tRNA hydrolase complexed with an XChem hit.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x O0J: N-[4-(2-amino-1,3-thiazol-4-yl)phenyl]acetamide(Non-covalent)

O0J.1: 9 residues within 4Å: Chain A: H.23, D.96, L.98, G.114, G.115, H.116, N.117, V.148, V.151 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.151 Hydrogen bonds: A:D.96, A:N.117

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: N.113, G.114, G.115 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.113, A:N.113, A:G.114, A:G.115 Water bridges: A:K.120 SO4.3: 4 residues within 4Å: Chain A: K.108, G.111, G.112 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.112, A:G.112 Salt bridges: A:K.108 SO4.4: 3 residues within 4Å: Chain A: K.106, R.135 Ligands: SO4.3 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.106, A:R.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hassell-Hart, S. et al., Synthesis of a Thiazole Library via an Iridium-Catalyzed Sulfur Ylide Insertion Reaction. Org.Lett. (2022)

Release Date

2022-11-09

Peptides

Peptidyl-tRNA hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-tRNA hydrolase

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