SMTL ID : 8ay6.1

X-RAY CRYSTAL STRUCTURE OF THE CsPYL1(V112L, T135L,F137I, T153I, V168A)-SB-HAB1 TERNARY COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-mer

Ligands

1 x QPZ: 1,4-dimethyl-2-oxidanylidene-~{N}-(phenylmethyl)quinoline-6-sulfonamide(Non-covalent)

QPZ.1: 17 residues within 4Å: Chain A: K.88, F.90, I.91, R.108, V.110, L.112, L.116, A.118, S.121, E.123, I.139, H.144, L.146, Y.149, F.188, V.192, N.196 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.112, A:H.144, A:Y.149, A:V.192 Hydrogen bonds: A:S.121, A:E.123

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 3 residues within 4Å: Chain B: D.65, G.66 Ligands: MN.3 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.65, B:G.66, H2O.6, H2O.6, H2O.6 MN.3: 4 residues within 4Å: Chain B: D.65, D.254, D.314 Ligands: MN.2 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.254, B:D.314, H2O.6, H2O.6, H2O.7 MN.4: 2 residues within 4Å: Chain B: D.254, D.258 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.254, B:D.258, B:D.258, H2O.9, H2O.10 MN.5: 3 residues within 4Å: Chain B: D.120, E.124, G.223 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.120, B:E.124, B:G.223, H2O.5, H2O.6

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain B: R.271, R.272 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: R.21, S.22 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: R.272, M.275, W.276, A.298 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: G.69, H.70, K.71 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 4 residues within 4Å: Chain B: W.257, D.258, V.259, M.260 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.258 Water bridges: B:R.170, B:R.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lozano-Juste, J. et al., Structure-guided engineering of a receptor-agonist pair for inducible activation of the ABA adaptive response to drought. Sci Adv (2023)

Release Date

2023-03-22

Peptides

Abscisic acid receptor PYL1: A
Protein phosphatase 2C 16: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Abscisic acid receptor PYL1

Protein phosphatase 2C 16

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